Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F21
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0545 - 18457169-18457399,18457733-18457915,18458012-184582...    28   4.5  
09_02_0404 - 8592872-8593231,8593735-8594004,8595551-8595964,859...    28   4.5  
03_05_0154 - 21302056-21302418,21302920-21303198,21304745-213051...    28   4.5  

>09_04_0545 -
           18457169-18457399,18457733-18457915,18458012-18458227,
           18459050-18459610
          Length = 396

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/39 (46%), Positives = 19/39 (48%)
 Frame = +1

Query: 265 KHWKRNPNQPGQAKIPGSRNVLLRFYPPQSALEANSRKQ 381
           K   R   Q G AK P + NVL   YP QSA E N   Q
Sbjct: 261 KERSRKSVQEGSAK-PKASNVLRPRYPGQSAREPNKAAQ 298


>09_02_0404 -
           8592872-8593231,8593735-8594004,8595551-8595964,
           8596249-8596398
          Length = 397

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 10  DNIFTDPYYEKFTDCLDEV 66
           D++FT+ YY K+ DC  E+
Sbjct: 199 DHLFTEYYYSKYPDCTPEL 217


>03_05_0154 -
           21302056-21302418,21302920-21303198,21304745-21305158,
           21305443-21305592
          Length = 401

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 10  DNIFTDPYYEKFTDCLDEV 66
           D++FT+ YY K+ DC  E+
Sbjct: 199 DHLFTEYYYSKYPDCTPEL 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,130,206
Number of Sequences: 37544
Number of extensions: 231478
Number of successful extensions: 571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)