Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F21
(481 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50193-1|AAA91247.2| 532|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 28 4.0
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z68161-10|CAN86582.1| 705|Caenorhabditis elegans Hypothetical p... 28 4.0
Z68161-5|CAA92299.2| 764|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z68161-4|CAD89735.1| 781|Caenorhabditis elegans Hypothetical pr... 28 4.0
AY185494-1|AAO26317.1| 764|Caenorhabditis elegans poly ADP-ribo... 28 4.0
AY185493-1|AAO26316.1| 781|Caenorhabditis elegans poly ADP-ribo... 28 4.0
Z93386-4|CAB07644.1| 370|Caenorhabditis elegans Hypothetical pr... 27 5.3
U80842-7|AAY55901.1| 149|Caenorhabditis elegans Hypothetical pr... 27 5.3
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 27 5.3
Z83111-6|CAB05529.2| 316|Caenorhabditis elegans Hypothetical pr... 27 7.0
U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absent... 27 7.0
AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical ... 27 7.0
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ... 27 7.0
Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical p... 27 9.3
Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical p... 27 9.3
Z81459-1|CAB03827.3| 731|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 27 9.3
Z79604-6|CAB97241.2| 731|Caenorhabditis elegans Hypothetical pr... 27 9.3
U64852-2|ABH03524.1| 975|Caenorhabditis elegans Uncoordinated p... 27 9.3
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p... 27 9.3
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 27 9.3
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein. 27 9.3
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 27 9.3
AF040657-4|AAB95053.1| 261|Caenorhabditis elegans Hypothetical ... 27 9.3
AF000198-9|AAB53057.4| 684|Caenorhabditis elegans Hypothetical ... 27 9.3
AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical ... 27 9.3
>U50193-1|AAA91247.2| 532|Caenorhabditis elegans Hypothetical
protein ZK328.4 protein.
Length = 532
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -3
Query: 266 FIICEKDNCICSSTVTKLKCFVLKNINVDSNTCGECAPSCLLSHKC-SSSTRVTIYCESL 90
F +CEKD C K + K+++ CG C +L C ++TR+ I
Sbjct: 415 FYVCEKDGC---DVEIKRQS---KSLDTSRKACGRCFGRFILYRYCRRTNTRIRIEDPKA 468
Query: 89 YKTENFLATSSKQS 48
L+ SSK S
Sbjct: 469 KPVGPILSNSSKPS 482
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 27.9 bits (59), Expect = 4.0
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Frame = -3
Query: 266 FIICEKDNCICSSTVT-----KLKCFVLKNINVDSNTC--GECAPSCLLSHKCS-SSTRV 111
FI+C D +CS T T + K + + C ECA +C +H C T
Sbjct: 1196 FILCYND--VCSFTWTGEDHINQDIYECKTCGLTGSLCCCSECALTCHRNHDCRLKRTSP 1253
Query: 110 TIYCESLYKT 81
T YC+ K+
Sbjct: 1254 TAYCDCWEKS 1263
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 27.9 bits (59), Expect = 4.0
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Frame = -3
Query: 266 FIICEKDNCICSSTVT-----KLKCFVLKNINVDSNTC--GECAPSCLLSHKCS-SSTRV 111
FI+C D +CS T T + K + + C ECA +C +H C T
Sbjct: 1196 FILCYND--VCSFTWTGEDHINQDIYECKTCGLTGSLCCCSECALTCHRNHDCRLKRTSP 1253
Query: 110 TIYCESLYKT 81
T YC+ K+
Sbjct: 1254 TAYCDCWEKS 1263
>Z68161-10|CAN86582.1| 705|Caenorhabditis elegans Hypothetical
protein F20C5.1d protein.
Length = 705
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 287 INQDKRKYLDLEMFCYASIRPSLH*KRIRENRKFTNSKENEENP 418
+ QD++ Y D +A P++ +++ E+ T SKE+ E P
Sbjct: 12 VTQDEKDYEDYVGVGFAHQVPTMKRRKLTEHGNTTESKEDPEEP 55
>Z68161-5|CAA92299.2| 764|Caenorhabditis elegans Hypothetical
protein F20C5.1b protein.
Length = 764
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 287 INQDKRKYLDLEMFCYASIRPSLH*KRIRENRKFTNSKENEENP 418
+ QD++ Y D +A P++ +++ E+ T SKE+ E P
Sbjct: 12 VTQDEKDYEDYVGVGFAHQVPTMKRRKLTEHGNTTESKEDPEEP 55
>Z68161-4|CAD89735.1| 781|Caenorhabditis elegans Hypothetical
protein F20C5.1a protein.
Length = 781
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 287 INQDKRKYLDLEMFCYASIRPSLH*KRIRENRKFTNSKENEENP 418
+ QD++ Y D +A P++ +++ E+ T SKE+ E P
Sbjct: 12 VTQDEKDYEDYVGVGFAHQVPTMKRRKLTEHGNTTESKEDPEEP 55
>AY185494-1|AAO26317.1| 764|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-3 short form protein.
Length = 764
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 287 INQDKRKYLDLEMFCYASIRPSLH*KRIRENRKFTNSKENEENP 418
+ QD++ Y D +A P++ +++ E+ T SKE+ E P
Sbjct: 12 VTQDEKDYEDYVGVGFAHQVPTMKRRKLTEHGNTTESKEDPEEP 55
>AY185493-1|AAO26316.1| 781|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-3 long form protein.
Length = 781
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 287 INQDKRKYLDLEMFCYASIRPSLH*KRIRENRKFTNSKENEENP 418
+ QD++ Y D +A P++ +++ E+ T SKE+ E P
Sbjct: 12 VTQDEKDYEDYVGVGFAHQVPTMKRRKLTEHGNTTESKEDPEEP 55
>Z93386-4|CAB07644.1| 370|Caenorhabditis elegans Hypothetical
protein R11H6.5 protein.
Length = 370
Score = 27.5 bits (58), Expect = 5.3
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = -3
Query: 227 TVTKLKCFVLKNINV-DSNTCGECAP---SCLL-SHKCSSSTRVTIYCESLYKTENFLAT 63
TV +L V++N+ + D GE CL+ SH C +TI E K E L
Sbjct: 122 TVAELGRKVVENMKIADPKETGEPLQMEYGCLITSHNCQVRLLITIIPEESTKLEPLLHL 181
Query: 62 SSKQ-SVNF 39
SKQ +NF
Sbjct: 182 DSKQMMINF 190
>U80842-7|AAY55901.1| 149|Caenorhabditis elegans Hypothetical
protein ZC239.21 protein.
Length = 149
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +1
Query: 118 VEEEHLWESKQLGAHSPHVLLSTLMFFNTKHFNLVTVEEHMQLSFSHIMKHWKR 279
+EE+ L +SK + ++P+V + L F N +F ++ +++ H +K WK+
Sbjct: 26 LEEQLLQKSKFVERNAPNVSAAELNFLN-GNFGTISASAQLEV-LDHKIKIWKK 77
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -3
Query: 251 KDNCICSSTVTKLKCFVLKNINVDSNTCGECAPSCLLSHKCSSSTRVTIYCES 93
++ C CS C N+ D +T +C+P C +C+ + C+S
Sbjct: 75 EETCQCSEGWMGSLC---DNLVTDDDTAQKCSPQCGDDERCTKGADGSYICQS 124
>Z83111-6|CAB05529.2| 316|Caenorhabditis elegans Hypothetical
protein F57G8.8 protein.
Length = 316
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 151 LGAHSPHVLLSTLMFFNTKHFNLVTVEEHMQLS 249
+ H P VL+ F N + F ++T EEH + S
Sbjct: 125 IALHMPAVLICHAHFENAQSFFVITSEEHKKTS 157
>U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absentia
protein homologue-1 protein.
Length = 339
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 308 IFACPG*LGFRFQCFIICEKDNCICSSTVTKLKC 207
+F CP L + ++ C + +CS+ KL+C
Sbjct: 87 VFECPVCLEYMLPPYMQCSSGHLVCSNCRPKLQC 120
>AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical
protein Y37E11AR.2 protein.
Length = 419
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 308 IFACPG*LGFRFQCFIICEKDNCICSSTVTKLKC 207
+F CP L + ++ C + +CS+ KL+C
Sbjct: 153 VFECPVCLEYMLPPYMQCSSGHLVCSNCRPKLQC 186
>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
protein R193.2 protein.
Length = 1853
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 10 DNIFTDPYYEKFTDCLDEVARKFSVLYNDSQY 105
DN TD Y+EK LD + K+SV S++
Sbjct: 1108 DNAMTDVYFEKIRTFLDILLIKYSVGEKGSRF 1139
>Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical
protein T27E9.4b protein.
Length = 591
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +1
Query: 49 DCLDEVARKFSVLYNDSQYIVTRVEEEHLWESKQLGAHSPHVLLSTLMFFNTKHFNLVTV 228
D LDE+ +K ++N+ + + L E+++L AH +L +T+ +F F L +
Sbjct: 28 DILDEMYKKSYSIFNELRSKCQLCDVALLVENRKLSAHKV-ILAATIPYFRGM-FTLDLM 85
Query: 229 EEHMQ 243
E +M+
Sbjct: 86 EANMK 90
>Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical
protein T27E9.4a protein.
Length = 589
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +1
Query: 49 DCLDEVARKFSVLYNDSQYIVTRVEEEHLWESKQLGAHSPHVLLSTLMFFNTKHFNLVTV 228
D LDE+ +K ++N+ + + L E+++L AH +L +T+ +F F L +
Sbjct: 28 DILDEMYKKSYSIFNELRSKCQLCDVALLVENRKLSAHKV-ILAATIPYFRGM-FTLDLM 85
Query: 229 EEHMQ 243
E +M+
Sbjct: 86 EANMK 90
>Z81459-1|CAB03827.3| 731|Caenorhabditis elegans Hypothetical
protein C03H12.1 protein.
Length = 731
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 330 VTLLSAPVCTRSEFEKTESLRTARKTKRIH 419
V LL +P RS++ + E TAR+ K++H
Sbjct: 149 VILLYSPYSIRSKWFREEYYTTARRLKKLH 178
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -3
Query: 242 CICSSTVTKLKC-FVLKNI-NVDSNTCGECAP 153
C+C VT LKC L N + S C EC P
Sbjct: 1105 CVCKPGVTGLKCDSCLPNFYGLTSEGCTECEP 1136
>Z79604-6|CAB97241.2| 731|Caenorhabditis elegans Hypothetical
protein C03H12.1 protein.
Length = 731
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 330 VTLLSAPVCTRSEFEKTESLRTARKTKRIH 419
V LL +P RS++ + E TAR+ K++H
Sbjct: 149 VILLYSPYSIRSKWFREEYYTTARRLKKLH 178
>U64852-2|ABH03524.1| 975|Caenorhabditis elegans Uncoordinated
protein 83, isoform b protein.
Length = 975
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 37 EKFTDCLDEVARKFSVLYNDSQYIVTRVEE 126
EK C+D + +++ +Y +S +V R+EE
Sbjct: 133 EKRKTCVDAIRKRWHTIYLNSLSLVCRIEE 162
>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
protein 83, isoform a protein.
Length = 1041
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 37 EKFTDCLDEVARKFSVLYNDSQYIVTRVEE 126
EK C+D + +++ +Y +S +V R+EE
Sbjct: 199 EKRKTCVDAIRKRWHTIYLNSLSLVCRIEE 228
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -3
Query: 242 CICSSTVTKLKC-FVLKNI-NVDSNTCGECAP 153
C+C VT LKC L N + S C EC P
Sbjct: 1105 CVCKPGVTGLKCDSCLPNFYGLTSEGCTECEP 1136
>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
Length = 1041
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 37 EKFTDCLDEVARKFSVLYNDSQYIVTRVEE 126
EK C+D + +++ +Y +S +V R+EE
Sbjct: 199 EKRKTCVDAIRKRWHTIYLNSLSLVCRIEE 228
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -3
Query: 242 CICSSTVTKLKC-FVLKNI-NVDSNTCGECAP 153
C+C VT LKC L N + S C EC P
Sbjct: 1105 CVCKPGVTGLKCDSCLPNFYGLTSEGCTECEP 1136
>AF040657-4|AAB95053.1| 261|Caenorhabditis elegans Hypothetical
protein T20H9.4 protein.
Length = 261
Score = 26.6 bits (56), Expect = 9.3
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +1
Query: 52 CLDEVAR-KFSVLYNDSQYIVTRVEE----EHL--WE-SKQLGAHSPHVLLSTLMFFNTK 207
CL ++R K VL N +IV R E+ HL W+ S+ L + HV+ L
Sbjct: 127 CLAILSRCKTKVLKNIDLFIVYRSEQFERITHLEQWKNSRTLKCWADHVISDPLPIEQFF 186
Query: 208 HFNLVTVEEH 237
HF +EEH
Sbjct: 187 HFEQFEIEEH 196
>AF000198-9|AAB53057.4| 684|Caenorhabditis elegans Hypothetical
protein T28F2.7 protein.
Length = 684
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 221 TKLKCFVLKNINVDSNTCGECAPSC 147
TK+K V ++ N++ TC EC C
Sbjct: 422 TKMKKVVNQSFNIEMPTCEECKVEC 446
>AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical
protein Y47D7A.6 protein.
Length = 446
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 187 LMFFNTKHFNLVTVEEHMQLSFSHIMKHWKRNP 285
+ F+ HFN V L+FS + KH K P
Sbjct: 166 IAIFSNDHFNSHLVSFGQSLTFSSVYKHGKHIP 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,193,038
Number of Sequences: 27780
Number of extensions: 239327
Number of successful extensions: 737
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -