Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F21
(481 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18940.2 68418.m02250 Mo25 family protein similar to SP|Q0613... 29 1.2
At5g18940.1 68418.m02249 Mo25 family protein similar to SP|Q0613... 29 1.2
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 29 1.2
At4g02600.1 68417.m00354 seven transmembrane MLO family protein ... 29 1.6
At3g26920.1 68416.m03368 F-box family protein contains F-box dom... 29 1.6
At1g50720.1 68414.m05703 stigma-specific Stig1 family protein si... 28 2.8
At5g61060.1 68418.m07662 histone deacetylase family protein simi... 27 6.5
At4g21660.1 68417.m03138 proline-rich spliceosome-associated (PS... 27 6.5
At5g55110.1 68418.m06870 stigma-specific Stig1 family protein si... 27 8.7
At5g51630.2 68418.m06402 disease resistance protein (TIR-NBS-LRR... 27 8.7
At5g51630.1 68418.m06401 disease resistance protein (TIR-NBS-LRR... 27 8.7
At1g32840.1 68414.m04047 Ulp1 protease family protein similar to... 27 8.7
>At5g18940.2 68418.m02250 Mo25 family protein similar to SP|Q06138
MO25 protein {Mus musculus}; contains Pfam profile
PF03204: Mo25 protein family
Length = 323
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 232 EHMQLSFSHIMKHWKRNPNQPGQAKIPGSRN 324
+++Q+S HI K + NPN+P + KI +RN
Sbjct: 249 KNIQISAFHIFKIFVANPNKPQEVKIILARN 279
>At5g18940.1 68418.m02249 Mo25 family protein similar to SP|Q06138
MO25 protein {Mus musculus}; contains Pfam profile
PF03204: Mo25 protein family
Length = 345
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 232 EHMQLSFSHIMKHWKRNPNQPGQAKIPGSRN 324
+++Q+S HI K + NPN+P + KI +RN
Sbjct: 271 KNIQISAFHIFKIFVANPNKPQEVKIILARN 301
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 239 ICSSTVTKLK-CFVLKNINVDSNTCGECAPSCLLSHKCSSSTRVTIYCESL 90
ICS T+LK C + I+ T G P C + S VT +C+S+
Sbjct: 175 ICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSV 225
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 239 ICSSTVTKLK-CFVLKNINVDSNTCGECAPSCLLSHKCSSSTRVTIYCESL 90
ICS T+LK C + I+ T G P C + S VT +C+S+
Sbjct: 296 ICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSV 346
>At4g02600.1 68417.m00354 seven transmembrane MLO family protein /
MLO-like protein 1 (MLO1) identical to MLO-like protein
1 (MLO protein homolog 1) [Arabidopsis thaliana]
SWISS-PROT:O49621; similar to MLO protein
SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
vulgare][Barley]
Length = 526
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +1
Query: 109 VTRVEEEHLWESKQLGAHSPHVLLSTLMFFNTKHFNLVTVEEHMQLSFSHIMKHWKRNP 285
VT V + LG V+L F + ++ VT +++ L IM H K NP
Sbjct: 211 VTHVHNHAFIKEHFLGIGKDSVILGWTQSFLKQFYDSVTKSDYVTLRLGFIMTHCKGNP 269
>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
Pfam:PF00646
Length = 565
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 178 VIHAVNALPVAYFPTSVPLLHELRYIVNHYTKLKIF 71
VIH L V F +VP L L IV +Y + +F
Sbjct: 101 VIHQTTDLNVKTFTIAVPSLQRLTVIVEYYEEFSVF 136
>At1g50720.1 68414.m05703 stigma-specific Stig1 family protein
similar to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 154
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 251 KDNCICSSTVTKLKCFVLKNINVDSNTCGECAPSCLLSHKC 129
K+ C + T + +C L D CGEC SCL+ C
Sbjct: 109 KNQCKFTQTCCRGECVYLA---YDKRHCGECNHSCLVGEFC 146
>At5g61060.1 68418.m07662 histone deacetylase family protein similar
to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens};
contains Pfam profile PF00850: Histone deacetylase
family
Length = 660
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 133 LWESKQLGAHSPHVLLSTLMFFNTKHFNLVTVEEHMQL--SFSHIMKHWKRN 282
+WE QL S ++ KH LV ++H+ L S S K ++RN
Sbjct: 56 IWEKLQLAGVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKSISTKQKDYRRN 107
>At4g21660.1 68417.m03138 proline-rich spliceosome-associated (PSP)
family protein similar to SP|Q13435 Splicing factor 3B
subunit 2 (Spliceosome associated protein 145) (SAP 145)
(SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa
subunit) {Homo sapiens}; contains Pfam profiles PF04046:
PSP, PF04037: Domain of unknown function (DUF382)
Length = 584
Score = 27.1 bits (57), Expect = 6.5
Identities = 8/22 (36%), Positives = 19/22 (86%)
Frame = +1
Query: 358 LEANSRKQKVYEQQGKRRESIK 423
++ NSRK+K+++++GK+++ K
Sbjct: 562 VQQNSRKRKMHDKEGKKKKDFK 583
>At5g55110.1 68418.m06870 stigma-specific Stig1 family protein
similar to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 163
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Frame = -3
Query: 257 CEKDNCICSST------VTKLKCFVLK--NINVDSNTCGECAPSCLLSHKC 129
C KDN ICSS+ + C K +++ D CG C C C
Sbjct: 77 CNKDNEICSSSDYSTGANATMACCNNKCMDLSTDDKNCGLCKNKCKFGQTC 127
>At5g51630.2 68418.m06402 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1175
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 236 CSSTVTKLKCFVLKNINVDSNTCGECAPSCLLSHKCSSSTRVTIYCESLYKTENFL 69
CSS + +L++ + + G P+C ++ C SS + ++ ES Y +E FL
Sbjct: 940 CSSLDRDAETLILESNHGCAVLPGGKVPNCFMNQACGSSVSIPLH-ESYY-SEEFL 993
>At5g51630.1 68418.m06401 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1229
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 236 CSSTVTKLKCFVLKNINVDSNTCGECAPSCLLSHKCSSSTRVTIYCESLYKTENFL 69
CSS + +L++ + + G P+C ++ C SS + ++ ES Y +E FL
Sbjct: 1004 CSSLDRDAETLILESNHGCAVLPGGKVPNCFMNQACGSSVSIPLH-ESYY-SEEFL 1057
>At1g32840.1 68414.m04047 Ulp1 protease family protein similar to
At4g04010, At2g06430, At2g15140, At2g04980, At2g14130,
At3g44500, At2g15190, At3g47260, At5g34900, At3g29210,
At2g02210, At3g32900
Length = 611
Score = 26.6 bits (56), Expect = 8.7
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = -3
Query: 284 GFRFQC-----FIICEKDNCICSSTVTKLKCFVLKNINVDSNT-C-GECAPSCL 144
GF+FQ II E+ CI + K KC+V I+++ T C ECA S L
Sbjct: 462 GFQFQSEEISKLIIEEETKCILAPFCIKGKCWVALLIHLEQKTVCIWECAASYL 515
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,210,054
Number of Sequences: 28952
Number of extensions: 202184
Number of successful extensions: 553
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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