Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F19
         (367 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0E558 Cluster: Chromosome undetermined scaffold_79, wh...    36   0.30 
UniRef50_A0CVN3 Cluster: Chromosome undetermined scaffold_29, wh...    31   6.5  

>UniRef50_A0E558 Cluster: Chromosome undetermined scaffold_79, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_79,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 786

 Score = 35.5 bits (78), Expect = 0.30
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = -1

Query: 355 TRALKEPLKSRRWIQHSLLHFLNFPLHVT*FELSIDKQ*SY--KTIVQSFYLRKGAFLNA 182
           T AL + L+S R++  +L HF   PLH     L  DK+  Y  K  V S +  + ++   
Sbjct: 42  TDALIQKLESHRFL--NLDHFYKIPLHQFSDILKYDKELEYKLKEFVASTFDTQFSWFIQ 99

Query: 181 NHYLI*HLDKCGRFYTYFRKVLVISQSS 98
           N Y++ HLD C      F   L  SQ++
Sbjct: 100 NEYIVTHLD-CSYQVDQFLNKLFYSQTN 126


>UniRef50_A0CVN3 Cluster: Chromosome undetermined scaffold_29, whole
            genome shotgun sequence; n=3; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_29, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 3648

 Score = 31.1 bits (67), Expect = 6.5
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = -1

Query: 103  SSITLIF*TEKS*RHNIQYFQNVLNLFST 17
            S I L F   K  R NIQY +NV NLFST
Sbjct: 3236 SKIDLRFSFHKRFRTNIQYDENVFNLFST 3264


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 307,462,612
Number of Sequences: 1657284
Number of extensions: 4915135
Number of successful extensions: 8040
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8037
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13220924981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)