Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F19
         (367 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24210| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_18998| Best HMM Match : Exo_endo_phos (HMM E-Value=1.1e-10)         27   3.5  
SB_51758| Best HMM Match : MNNL (HMM E-Value=1.2)                      26   8.1  

>SB_24210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -3

Query: 71  ILTPQYTIFSKCIEFI*YVVFPR 3
           ++ P+Y ++ KC+ +  YVV+P+
Sbjct: 57  VVYPKYVVYPKCVVYPKYVVYPK 79


>SB_18998| Best HMM Match : Exo_endo_phos (HMM E-Value=1.1e-10)
          Length = 422

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 265 FELSIDKQ*SYKTIVQSFYLRKGAFLNANHYLI 167
           F+L++    + K++V+S YLRKG  L    +L+
Sbjct: 227 FDLNLKPSFTRKSLVKSLYLRKGTVLGPLMFLL 259


>SB_51758| Best HMM Match : MNNL (HMM E-Value=1.2)
          Length = 326

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 235 YKTIVQSFYLRKGAFLNANHYLI*HLDKCGRFYTYFRKVLVISQSS 98
           Y+   Q  Y R  A +N       H D    +Y +FR +L+I+QS+
Sbjct: 11  YRYRYQHCYHRYIAIINIIIIANFHSDDDNEYYRWFRVMLIINQSA 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,544,051
Number of Sequences: 59808
Number of extensions: 156131
Number of successful extensions: 239
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)