Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F19
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125951-2|AAD14691.1|  643|Caenorhabditis elegans Hypothetical ...    28   1.8  
AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans AP...    26   7.2  
AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans AP...    26   7.2  
AC024202-2|AAP86608.1|  226|Caenorhabditis elegans C. elegans AP...    26   7.2  

>AF125951-2|AAD14691.1|  643|Caenorhabditis elegans Hypothetical
           protein D2063.2 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 137 YVFPKSTSYFSVFYHVNILN*EILTPQYTIFSKCIE 30
           YV  +  SYF+  YH++    E++ P Y+  +K ++
Sbjct: 608 YVDSRGFSYFTTLYHLSAHGIELVRPIYSAIAKSLK 643


>AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans APB-1
           protein, isoform c protein.
          Length = 827

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 124 FGNTYKSDRIYLNVRLNSDSRLKKRPCVSRMIA 222
           F  T K +   L   LNSD + KK+  V ++IA
Sbjct: 7   FTTTKKGEIFELKNELNSDKKEKKKEAVKKVIA 39


>AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans APB-1
           protein, isoform a protein.
          Length = 955

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 124 FGNTYKSDRIYLNVRLNSDSRLKKRPCVSRMIA 222
           F  T K +   L   LNSD + KK+  V ++IA
Sbjct: 7   FTTTKKGEIFELKNELNSDKKEKKKEAVKKVIA 39


>AC024202-2|AAP86608.1|  226|Caenorhabditis elegans C. elegans APB-1
           protein, isoform b protein.
          Length = 226

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 124 FGNTYKSDRIYLNVRLNSDSRLKKRPCVSRMIA 222
           F  T K +   L   LNSD + KK+  V ++IA
Sbjct: 7   FTTTKKGEIFELKNELNSDKKEKKKEAVKKVIA 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,293,051
Number of Sequences: 27780
Number of extensions: 125789
Number of successful extensions: 226
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)