Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F18
         (331 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8ILJ1 Cluster: Putative uncharacterized protein; n=5; ...    31   4.9  
UniRef50_A4J3P0 Cluster: Putative uncharacterized protein; n=1; ...    31   6.5  
UniRef50_Q9KBP8 Cluster: BH1877 protein; n=1; Bacillus haloduran...    30   8.5  
UniRef50_Q27W68 Cluster: NigAVI; n=2; Streptomyces|Rep: NigAVI -...    30   8.5  
UniRef50_Q00SP0 Cluster: Flavin-containing monooxygenase; n=2; O...    30   8.5  

>UniRef50_Q8ILJ1 Cluster: Putative uncharacterized protein; n=5;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1477

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 171 RDNVRTRYFHYVYDMSTCLH 230
           RDNV   Y++Y+Y ++ CLH
Sbjct: 241 RDNVNENYYNYIYLLTLCLH 260


>UniRef50_A4J3P0 Cluster: Putative uncharacterized protein; n=1;
           Desulfotomaculum reducens MI-1|Rep: Putative
           uncharacterized protein - Desulfotomaculum reducens MI-1
          Length = 439

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 139 GTSYNVHSYGPLKLCSNVCRFLTL-ELAPNRIPSVQI 32
           G  +  HS+GP++ C N C F  + ++AP+   S+ I
Sbjct: 76  GLDFGEHSFGPIRRCHNRCLFCFVDQMAPSMRESLYI 112


>UniRef50_Q9KBP8 Cluster: BH1877 protein; n=1; Bacillus
           halodurans|Rep: BH1877 protein - Bacillus halodurans
          Length = 758

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 126 MYTLTGHLNYVQMSVDF*HLNWLQIE 49
           +YTLTGH +Y+Q+++ F H  W  +E
Sbjct: 196 LYTLTGHKDYLQLAIRFCH--WAVLE 219


>UniRef50_Q27W68 Cluster: NigAVI; n=2; Streptomyces|Rep: NigAVI -
            Streptomyces violaceoniger
          Length = 1701

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 247  SRGHVERSRFHCISPTVPRLALTSL 321
            S  H ERSR   +SP  PRLALT+L
Sbjct: 1444 SAPHTERSRRQGLSPLDPRLALTAL 1468


>UniRef50_Q00SP0 Cluster: Flavin-containing monooxygenase; n=2;
           Ostreococcus|Rep: Flavin-containing monooxygenase -
           Ostreococcus tauri
          Length = 573

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 6   GVCIFYDISICTLGIRFGASSSVKNLQTFEHNLSGP*E-CTL*DVPRPLY 152
           G C  YD+ IC  G R       KNLQ  E   SG  E C L   PR  Y
Sbjct: 393 GTCSVYDVIICATGYRRSFDFMAKNLQPNEK--SGLFEDCILPSDPRVAY 440


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 343,040,149
Number of Sequences: 1657284
Number of extensions: 6325940
Number of successful extensions: 11566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11565
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 9961543501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)