Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F18
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   0.97 
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   1.3  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   1.3  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   2.2  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    25   3.9  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      24   5.2  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    24   6.8  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    24   6.8  
SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|ch...    23   9.0  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 102  NYVQMSVDF*HLNWLQIEYPVYRY*YHKKYTHL 4
            NYV    DF  LN+LQI+  ++RY Y     H+
Sbjct: 1384 NYVARVRDFYALNFLQIKTLLHRYDYADYEAHV 1416


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 307  QDVAQWAKYSESESARRAHATL 242
            +DVA WA+ S SE A+  HA L
Sbjct: 1239 EDVAHWAQSSLSEMAKCFHAEL 1260


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 3/21 (14%)
 Frame = +1

Query: 4   KVC---VFFMISVSVHWVFDL 57
           KVC   VFF++++  +WVFDL
Sbjct: 42  KVCHFFVFFLLTLVFYWVFDL 62


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 58  EPVQVLKIYRHLNII*VARKSVHYRMCRGRFTKCP 162
           EP+Q L I  H     V+R+   +R  R RF++ P
Sbjct: 548 EPIQDLSIPIHYPSSRVSRRHRFHRALRSRFSRSP 582


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 271 ESARRAHATLPILKCKQVLISYT*WKYRVLTLSRLIPDTL*SGRGT 134
           +S R +H T P  K     I Y+ + Y     + L+PDTL S RGT
Sbjct: 87  QSRRSSHKTRP--KQFDECI-YSPYSYNNEETTDLLPDTLESSRGT 129


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 1   KKVCVFFMISVSVHWVFDLEPV 66
           K + VFF I  +VHW F L P+
Sbjct: 223 KSINVFFFILFAVHW-FALFPI 243


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 174 DNVRTRYFHYVYDMSTCLHF 233
           D  RT YF Y YD+S  + +
Sbjct: 149 DLARTFYFSYSYDLSQTIQY 168


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 48  IRFGASSSVKNLQTFEHN 101
           IRFGA  S  N++ ++HN
Sbjct: 285 IRFGARLSGANIRVYKHN 302


>SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 133 MCRGRFTKCPG*VAITL 183
           +C+ +FT CPG  +I+L
Sbjct: 67  ICKPQFTGCPGLTSISL 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,105
Number of Sequences: 5004
Number of extensions: 27623
Number of successful extensions: 52
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)