Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F18
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0117 + 16826133-16826600,16826650-16827201,16827310-168274...    28   2.0  
01_01_0162 - 1394980-1395760,1396024-1396037                           27   3.6  
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683...    27   4.7  
07_01_0244 + 1786009-1788048                                           26   6.2  
01_01_0159 + 1380421-1381143                                           26   6.2  
03_02_0688 + 10422337-10422873                                         26   8.3  
01_05_0227 - 19512866-19514983                                         26   8.3  

>06_03_0117 +
           16826133-16826600,16826650-16827201,16827310-16827453,
           16827543-16827959
          Length = 526

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 185 SNVIATHPGHFVKRPRHIL 129
           S  +A HPG   +RPRH+L
Sbjct: 140 SRALAAHPGALPQRPRHLL 158


>01_01_0162 - 1394980-1395760,1396024-1396037
          Length = 264

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -3

Query: 320 NEVSARRGTVGEIQ*KRERSTCPRDAAYLKM*TSAHIVYIMEISCSNVIATHPGHFVKRP 141
           + +S R    G++        C RD  Y +     HI+Y + + C N  A H G   + P
Sbjct: 5   SSLSCRSSCHGKLLDTSRCHMCSRDGGYRRCVAVDHILYAITVPCPN--AAH-GCAARTP 61

Query: 140 RH 135
            H
Sbjct: 62  YH 63


>04_01_0519 +
           6831912-6831978,6832333-6832488,6832748-6833098,
           6833481-6833662,6833756-6834004,6834182-6834406,
           6837492-6837791,6838642-6839215,6839959-6840059
          Length = 734

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 157 TL*SGRGTSYNVHSYGPLKLCSNVCRFLTLELAPNRIPSV 38
           TL S + +   V+ YGP+ L     +FLT +L  NR+  V
Sbjct: 468 TLVSKKNSPETVNDYGPISLMGLSLKFLT-KLKANRLQGV 506


>07_01_0244 + 1786009-1788048
          Length = 679

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 107 WPVRVYIIGCAAAALQSVRDE 169
           WP R+++I C AA L  + D+
Sbjct: 461 WPQRLHVIKCVAAGLLYLHDD 481


>01_01_0159 + 1380421-1381143
          Length = 240

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 257 CPRDAAYLKM*TSAHIVYIMEISCSNVIATHPGHFVKRPRH 135
           C RD  Y +     HI+Y + + C N  A H G   + P H
Sbjct: 2   CSRDGGYRRCVAVDHILYAITVPCPN--AAH-GCAARTPYH 39


>03_02_0688 + 10422337-10422873
          Length = 178

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 206 YIMEISCSNVIATHPGHFVKRP 141
           Y   ++   V+A HP H + RP
Sbjct: 33  YARPVTAGEVVAAHPSHVLSRP 54


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 159 TLCKAAAAHPIMYTLTGHLNYVQMS 85
           T C A    P   TL GHL YV +S
Sbjct: 548 TFCTAFKHLPQCITLLGHLQYVDLS 572


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,323,316
Number of Sequences: 37544
Number of extensions: 179797
Number of successful extensions: 319
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)