Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F18
         (331 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   2.1  
SB_48710| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)                    27   4.9  
SB_31845| Best HMM Match : Arm (HMM E-Value=3.2e-13)                   26   6.5  
SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)                     26   8.5  
SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12)                26   8.5  

>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 253 GHVERSRFHCISPTVPRLALTSLS 324
           G V  S  HC +P++P LAL+S+S
Sbjct: 493 GGVSSSERHCDNPSMPPLALSSVS 516


>SB_48710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 117 ECTL*DVPRPLYKVSGMSRDNVRTRYFHYVYDMSTCLHFKIGSVA-WARRAL 269
           EC +  + RP Y V GM+ +  R   F    +    L  K+G V  W R  L
Sbjct: 28  ECIVAPIARPCYVVDGMAPNTERPVCFEKSLNSPFYLSDKLGVVGRWMRHRL 79


>SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)
          Length = 865

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 200 MEISCSNVIATHPGHFVKRPRH 135
           +E  C NV++THP H +    H
Sbjct: 723 LESRCRNVLSTHPQHQLNNDEH 744


>SB_31845| Best HMM Match : Arm (HMM E-Value=3.2e-13)
          Length = 771

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 315 SKRKTWHSGRNTVKARA 265
           SK KTW+SG N V  R+
Sbjct: 32  SKEKTWNSGNNNVLGRS 48


>SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)
          Length = 334

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +3

Query: 219 TCLHFKIGSVAWARRALSLSLYFAHCATSCAY 314
           +C +  +  +AW+ R +   ++ + C  SCA+
Sbjct: 211 SCAYVDVFPIAWSCRCVPHRVFMSMCPLSCAH 242


>SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12)
          Length = 433

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -2

Query: 222 KCSYRIHNG 196
           KCSYRIHNG
Sbjct: 143 KCSYRIHNG 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,014,979
Number of Sequences: 59808
Number of extensions: 213215
Number of successful extensions: 316
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)