Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F18
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110501-7|CAB54508.2|  167|Caenorhabditis elegans Hypothetical ...    28   1.8  
Z70755-1|CAA94781.2|  292|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AF016681-21|AAK68344.1|  243|Caenorhabditis elegans Hypothetical...    26   7.3  

>AL110501-7|CAB54508.2|  167|Caenorhabditis elegans Hypothetical
          protein Y79H2A.2 protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 7  VCVFFMISVSVHWVFDLEPVQVLK 78
          + + F+I   V+W+FDL P++  K
Sbjct: 21 ITIIFLILPIVNWIFDLAPIEAHK 44


>Z70755-1|CAA94781.2|  292|Caenorhabditis elegans Hypothetical
           protein K06A4.1 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 192 YFHYVYDMSTCLHFKIGSVAWARR 263
           Y+   YD ++ +H+  GSV W +R
Sbjct: 208 YYMGGYDANSIMHYNFGSVPWQKR 231


>AF016681-21|AAK68344.1|  243|Caenorhabditis elegans Hypothetical
           protein F22E5.17 protein.
          Length = 243

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 234 KIGSVAWARRALSLSLYFAHCATSCA 311
           K+GSV W   ALS  +Y  H   +CA
Sbjct: 120 KLGSVQWTNNALSNEVY-QHLMGTCA 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,046,139
Number of Sequences: 27780
Number of extensions: 157344
Number of successful extensions: 262
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)