Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F18
         (331 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha...    28   1.7  
At1g16760.1 68414.m02013 protein kinase family protein contains ...    26   5.3  
At3g24590.1 68416.m03089 signal peptidase I family protein conta...    26   7.0  
At4g33530.1 68417.m04765 potassium transporter family protein si...    25   9.3  
At2g40540.1 68415.m05002 potassium transporter, putative (KT2) i...    25   9.3  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    25   9.3  
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f...    25   9.3  

>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
           putative contains Pfam PF00400: WD domain, G-beta
           repeat; similar to Coatomer alpha subunit (Alpha-coat
           protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
           [Homo sapiens]
          Length = 1218

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 204 HNGNIVF*RYRDSSRTLCKAAAAHPIMYTLTGHLNYVQMSVDF*HLN-WL 58
           HN   +F    D  +        H  ++TL GHL+Y++ +V F H N W+
Sbjct: 60  HNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIR-TVQFHHENPWI 108


>At1g16760.1 68414.m02013 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 758

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 316 K*AQDVAQWA-KYSESESARRAHATLPILKCKQVLISYT*WKYRVLTLSRLIPDTL*SGR 140
           K A + A+ A + +E E+ RR HA + +LK       ++  +YR  ++  +   T     
Sbjct: 393 KTALEAAEAANRLAEVEAKRRVHAEMKVLKESDSFSRHSIVRYRKYSVQEIEEGTANFAE 452

Query: 139 GTSYNVHSYGPL 104
                   YGP+
Sbjct: 453 SRKVGEGGYGPV 464


>At3g24590.1 68416.m03089 signal peptidase I family protein contains
           Pfam profile: PF00461 signal peptidase I
          Length = 291

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 142 RGTSYNVHSYGPLKLCSNVCRFLTLELAPNRI 47
           R  SY+ H +GPL L + + R +     PNR+
Sbjct: 246 RNNSYDSHVWGPLPLKNIIGRSVFRYWPPNRV 277


>At4g33530.1 68417.m04765 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; KUP/HAK/KT Transporter family member,
           PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 855

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 112 GPLKLCSNVCRFLTLELAPNRIPS 41
           G   L S +CR   + L PN++PS
Sbjct: 176 GTFALYSLICRHANVSLIPNQLPS 199


>At2g40540.1 68415.m05002 potassium transporter, putative (KT2)
           identical to putative potassium transporter AtKT2p
           [Arabidopsis thaliana] gi|2384671|gb|AAC49845, strong
           similarity to potassium transporter HAK2p
           [Mesembryanthemum crystallinum] GI:14091471; KUP/HAK/KT
           Transporter family member, PMID:11500563
          Length = 794

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 112 GPLKLCSNVCRFLTLELAPNRIPSVQILIS*KIHTP 5
           G   L S +CR + + L PNR  S + L + K+  P
Sbjct: 95  GTFALYSLICRHVKVSLLPNRQVSDEALSTYKLEHP 130


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q12019)
           [Saccharomyces cerevisiae]; similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
           sapiens]; contains Prosite PS00017: ATP/GTP-binding site
           motif A (P-loop)
          Length = 5336

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 294 SGRNTVKARALDVPTRRCLS*NVNKCSYRIHNGNIVF 184
           SGR   K    ++    CL   VNK   +IH+G +VF
Sbjct: 790 SGRKRKKPEE-ELKNCACLRTKVNKIRQQIHSGGMVF 825


>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 892

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 309 RKTWHSGRNTVKARALDVPTRR 244
           RK W SG+NTV  RA      R
Sbjct: 358 RKLWSSGQNTVAPRAFKTKLAR 379


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,400,314
Number of Sequences: 28952
Number of extensions: 141183
Number of successful extensions: 236
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)