Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F17
(322 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein. 23 0.60
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 23 1.0
AF227923-1|AAF36721.1| 351|Tribolium castaneum abdominal-B prot... 21 4.2
AJ223614-1|CAA11490.1| 301|Tribolium castaneum orthodenticle-2 ... 20 7.3
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 19 9.7
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 19 9.7
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 19 9.7
AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin pr... 19 9.7
>AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein.
Length = 717
Score = 23.4 bits (48), Expect = 0.60
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +3
Query: 123 VKLIDEVIYEVTGKTVIRTQDDIHIDGF-NPSAEEADEGTDSNVETGVDIVLN 278
+ LIDE+ Y +I DDI F N AD + VDI LN
Sbjct: 525 ISLIDEISYMAPPAPLISQYDDIDPQQFCNGDNRPADCQQNCMCTHKVDIPLN 577
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
protein.
Length = 2700
Score = 22.6 bits (46), Expect = 1.0
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 212 GVKSINVDIVLCSDHGLAGDFINNFVDQLNFI-RIREHLVTSYNILIDYHFDGLE 51
G+K +N + + G D + F ++ R RE + ++ + Y+FDG++
Sbjct: 240 GLKRVNPKLKVLISVGEGRDGSHRFSTMVSSANRRREFIRSAITFIKQYNFDGMD 294
Score = 20.2 bits (40), Expect = 5.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 178 HKTISTLMDLTPRPRRLTKGRIPTW 252
H T+ + LTP +R+ IP++
Sbjct: 5 HITLCAFLILTPTDQRVVTRTIPSF 29
Score = 19.4 bits (38), Expect = 9.7
Identities = 6/13 (46%), Positives = 7/13 (53%)
Frame = -2
Query: 252 PRWNPSLRQPPRP 214
P W P+ PP P
Sbjct: 1367 PEWQPTEWHPPIP 1379
Score = 19.4 bits (38), Expect = 9.7
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = -3
Query: 212 GVKSINVDIVLCSDHGLAGDFINNFVDQL 126
G +N D ++ H DF N F +++
Sbjct: 1858 GFAVLNGDQLIIKPHDTWADFDNKFYEKV 1886
>AF227923-1|AAF36721.1| 351|Tribolium castaneum abdominal-B
protein.
Length = 351
Score = 20.6 bits (41), Expect = 4.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 257 WCRHSPESQASRN 295
WC +S S ASR+
Sbjct: 147 WCNYSAYSSASRH 159
>AJ223614-1|CAA11490.1| 301|Tribolium castaneum orthodenticle-2
protein protein.
Length = 301
Score = 19.8 bits (39), Expect = 7.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 166 VLPVTS*ITSSINLTLYVSENISSPVITS 80
+L TS SIN S + SSP +T+
Sbjct: 150 ILTKTSPTPVSINNNTSTSSSASSPSVTA 178
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 19.4 bits (38), Expect = 9.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 259 PVSTLESVPSSASSAEGLNP 200
P T+E+V + EG+ P
Sbjct: 19 PSDTIENVKAKIQDKEGIPP 38
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 19.4 bits (38), Expect = 9.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 259 PVSTLESVPSSASSAEGLNP 200
P T+E+V + EG+ P
Sbjct: 19 PSDTIENVKAKIQDKEGIPP 38
Score = 19.4 bits (38), Expect = 9.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 259 PVSTLESVPSSASSAEGLNP 200
P T+E+V + EG+ P
Sbjct: 95 PSDTIENVKAKIQDKEGIPP 114
Score = 19.4 bits (38), Expect = 9.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 259 PVSTLESVPSSASSAEGLNP 200
P T+E+V + EG+ P
Sbjct: 171 PSDTIENVKAKIQDKEGIPP 190
Score = 19.4 bits (38), Expect = 9.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 259 PVSTLESVPSSASSAEGLNP 200
P T+E+V + EG+ P
Sbjct: 247 PSDTIENVKAKIQDKEGIPP 266
Score = 19.4 bits (38), Expect = 9.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 259 PVSTLESVPSSASSAEGLNP 200
P T+E+V + EG+ P
Sbjct: 323 PSDTIENVKAKIQDKEGIPP 342
Score = 19.4 bits (38), Expect = 9.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 259 PVSTLESVPSSASSAEGLNP 200
P T+E+V + EG+ P
Sbjct: 399 PSDTIENVKAKIQDKEGIPP 418
Score = 19.4 bits (38), Expect = 9.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 259 PVSTLESVPSSASSAEGLNP 200
P T+E+V + EG+ P
Sbjct: 475 PSDTIENVKAKIQDKEGIPP 494
Score = 19.4 bits (38), Expect = 9.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 259 PVSTLESVPSSASSAEGLNP 200
P T+E+V + EG+ P
Sbjct: 551 PSDTIENVKAKIQDKEGIPP 570
Score = 19.4 bits (38), Expect = 9.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 259 PVSTLESVPSSASSAEGLNP 200
P T+E+V + EG+ P
Sbjct: 627 PSDTIENVKAKIQDKEGIPP 646
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 19.4 bits (38), Expect = 9.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 259 PVSTLESVPSSASSAEGLNP 200
P T+E+V + EG+ P
Sbjct: 19 PSDTIENVKAKIQDKEGIPP 38
>AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin
protein.
Length = 112
Score = 19.4 bits (38), Expect = 9.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 259 PVSTLESVPSSASSAEGLNP 200
P T+E+V + EG+ P
Sbjct: 67 PSDTIENVKAKIQDKEGIPP 86
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,601
Number of Sequences: 336
Number of extensions: 1668
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used: 6048897
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
- SilkBase 1999-2023 -