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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F17
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    70   8e-14
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.23 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    28   0.30 
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    28   0.30 
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    28   0.30 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   0.40 
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   0.53 
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    27   0.93 
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   1.2  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   2.1  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    25   2.8  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   2.8  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   2.8  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   3.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   3.8  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    25   3.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   5.0  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    24   5.0  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    24   6.6  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    24   6.6  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    24   6.6  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    24   6.6  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    24   6.6  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    24   6.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    23   8.7  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    23   8.7  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           23   8.7  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    23   8.7  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 70.1 bits (164), Expect = 8e-14
 Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
 Frame = +3

Query: 66  MIIYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTV-IRTQDDIHIDGFNPSAEEADEGTD 242
           M++YKDVI+GDE+ SD Y +K +D+++YE   + V ++   D+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 243 SNVETGVDIVLNHRLVETYAFGDKKS 320
              ET  ++V + RL  T +F DKKS
Sbjct: 60  EGTETVNNLVYSFRLSPT-SF-DKKS 83


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -1

Query: 265 STPVSTLESVPSSASSAEGLNPSMWISSCVLITVLPVTS*ITSSINLTLYVSENISSPVI 86
           +T  +T  SVP +++     N +  ISS   +T  PVT+   ++    LY S  I+SP  
Sbjct: 552 TTNCTTSTSVPYTSTPVTSSNYT--ISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNS 609

Query: 85  TS 80
           TS
Sbjct: 610 TS 611



 Score = 25.8 bits (54), Expect = 1.6
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 265 STPVSTLESVPSSASSAEGLNPSMWISSCVLITVLPVTS*ITSSINLTLYVSENISSPVI 86
           +TPV+   +VP ++SS      +   S+ V  T  PVTS   ++ N T   S   +S  +
Sbjct: 406 TTPVTP--TVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPV 463

Query: 85  TS 80
           TS
Sbjct: 464 TS 465



 Score = 24.6 bits (51), Expect = 3.8
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = -1

Query: 271 TMSTPVSTLESVPSSASSAEGLNPSMWISSCVLITVLPVTS-*ITSSINLTLYVSENISS 95
           ++STP++      S++S++  + P+   S+    + LP TS   T+S ++    S ++S+
Sbjct: 186 SLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLST 245

Query: 94  PV 89
           P+
Sbjct: 246 PI 247



 Score = 24.6 bits (51), Expect = 3.8
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -1

Query: 265 STPVSTLESVPSSAS---SAEGLNPSMWISSCVLITVLPVTS*ITSSINLTLYVSENISS 95
           STPV++     SS++   S      +   S+ VL T  PVTS   ++ N T   S   +S
Sbjct: 506 STPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTS 565

Query: 94  PVITS 80
             +TS
Sbjct: 566 TPVTS 570


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +3

Query: 135 DEVIYEVTGKTVIRTQDDIHIDGFNPSAEE-----ADEGTDSNVET-GVDIVLNHRLVE 293
           DE+ +       +   +D + + F    EE     A E ++   +T  +D+VL+HRL+E
Sbjct: 145 DEIRFSSRNSKGVNYNEDAYFESFEEEEEEEMYEYATEVSEEPEDTRAIDVVLDHRLIE 203


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +3

Query: 18  SRSFGFIILNRLQSIKMIIYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTVIR 176
           SR+  + I  +L    +++YK  +    M  DT++    ++ +YE++G   +R
Sbjct: 118 SRNLLYSIAEKLGLSSIVVYKAELITSSMLLDTFQTMESNQEMYELSGTRKMR 170


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 123 VKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYA 302
           +KLID  I +  G        D HI   N  A EA    +++  +GV +V   R  + ++
Sbjct: 455 LKLIDFGIAKAIGNDTTNIHRDSHIGTINYMAPEALTDMNAHTNSGVKLVKLGRPSDVWS 514

Query: 303 FG 308
            G
Sbjct: 515 LG 516


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -1

Query: 295 VSTSL*FRTMSTPVSTLESVPSSASSAEGLNPSMWISSCVLITVLPVTS*ITSSINLTLY 116
           +S+SL   + STP  T    PS+ S    L PS   S+    +++ V S +TS I+ T  
Sbjct: 566 ISSSLTATSTSTPALTHSITPSNTSYTSSLIPSS--STDYSSSLITVCSNVTSEISSTSL 623

Query: 115 VS 110
            S
Sbjct: 624 AS 625


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 185 VLCSDHGLAGDFINNFVDQLNFIRIREHLVTSYNILIDYHFDGLE 51
           V+C D GL+G+F        + IR +  +   Y  LI Y FDG E
Sbjct: 288 VMCLDLGLSGEFCTAVA---HSIREQCQMYIKYLSLIGYLFDGSE 329


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 165 TVIRTQDDIHIDGFNPSAEEADEGTDSNVE 254
           T+  ++DDIH D ++  A+  DE   SNVE
Sbjct: 50  TIDDSEDDIHYDDYD--ADAVDEEMPSNVE 77


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 39  ILNRLQSIKMIIYKDVITGDEMFSDTYKVKLID 137
           ILN++    M IY   IT D   SDTY++   D
Sbjct: 30  ILNKIFHPCMYIYSRGITNDTYSSDTYELDWYD 62


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -1

Query: 295  VSTSL*FRTMSTPVSTLESVPSS-ASSAEGLNPSMW 191
            V+T++ + + STPVST+  +P++  S   GL  +++
Sbjct: 981  VATTITYSSSSTPVSTVVVIPTAVCSGVRGLQYAVY 1016


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 135 DEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTD 242
           DEV +  +G   I    +  +D  +   EE+DE  D
Sbjct: 103 DEVFFSASGDATIHLSGNFLVDEEDEEEEESDEDYD 138


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
 Frame = +3

Query: 138 EVIYE--VTGKTVIRTQDDIHIDG---FNPSAEEA-DEGTDSNV 251
           E+I E  VTG  +I  Q+ +H+D    F P+AE +  +GT   +
Sbjct: 501 EIIPEPNVTGNALIELQESLHLDSYGFFFPNAERSLPKGTRGRI 544


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 262 TPVSTLESVPSSASSAEG 209
           +P+S+LES+PS +S+  G
Sbjct: 151 SPISSLESLPSRSSTGSG 168


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 15/71 (21%), Positives = 32/71 (45%)
 Frame = +3

Query: 72  IYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNV 251
           I K    G E  ++ ++++ +DE   +   +T++   DD+ +        +  E  D  V
Sbjct: 21  ILKKHPAGTENITNIWQMRAMDEECRKQLAETILPLPDDVSVTDILIPTRDGTE-IDGRV 79

Query: 252 ETGVDIVLNHR 284
            T V +  ++R
Sbjct: 80  FTPVSVPADYR 90


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -1

Query: 316 FLSPKAYVSTSL*FRTMSTPVSTLESVPSSASSAEGLNPSMWISSCVLITVLPVTS*ITS 137
           F S     ++ L   + STP+S     P+S  ++ G N +  + +  + T L  +S   S
Sbjct: 682 FTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSVSTPLSNSSAYPS 741

Query: 136 SINLTL-YVSENISSPVI 86
           S + T   +S  ++S +I
Sbjct: 742 SGSSTFSRLSSTLTSSII 759



 Score = 23.4 bits (48), Expect = 8.7
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
 Frame = -1

Query: 316 FLSPKAYVSTSL*FRTMSTPVSTLESVPSSASSAEGLNPSMWI----SSCVL--ITVLPV 155
           F S     ++ L   + STP S    VP+S  ++ G N +  +    +S  L   TV P 
Sbjct: 651 FTSSGFNTTSGLPTSSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPT 710

Query: 154 TS*ITSSINLTLYV-SENISSPVITS 80
           ++  +S  N T  + + ++S+P+  S
Sbjct: 711 STFTSSGFNTTSGLPTSSVSTPLSNS 736


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 198 DGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGD 311
           D F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 16  DIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +3

Query: 132  IDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNVETGVDI 269
            +DE I +     +    + ++ DGF  + +E +E T+  V++  ++
Sbjct: 4141 LDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEEL 4186


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -3

Query: 149 INNFVDQLNFIRIREHLVTSYNILIDYHFDGLEAI*NN 36
           ++ F + LN++ IR  ++   +I+ID + + ++   NN
Sbjct: 462 LDGFEELLNYLYIRAQILRDCDIIIDIYNEPVKISKNN 499


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 9  GARSRSFGFIILNRLQS 59
          G  + SF F++LNRLQ+
Sbjct: 17 GVATFSFAFLVLNRLQA 33


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 132 IDEVIYEVTGKTVIRTQDDIHIDG 203
           ID V +EV  ++ I+ +DD  ++G
Sbjct: 386 IDAVPFEVPQRSAIKARDDEQVEG 409


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 215 RGVKSINVDIVLCSDHGLAGDFINNFVDQLNFIRIREHLVTSYNILI 75
           R ++S+  D  L +D   +G  + N   QLN +   E  +T Y+ L+
Sbjct: 82  RSLQSLMAD--LNTDIQASGRDLQNMKQQLNSLSTSERFLTKYHNLV 126


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +3

Query: 63  KMIIYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTVI--RTQDDIH-IDGFNPSAEEADE 233
           KM+ Y D+ TGD + +   +   I  ++Y  +G         DD+  + G   S+   D 
Sbjct: 254 KMVYYWDLNTGDAISTYNCESGQISNIVYRPSGAVNPWGSESDDMRSLFGTPASSSSYDA 313

Query: 234 GTDSNVETGVD 266
             D  VE  ++
Sbjct: 314 LFDEEVEKAIE 324


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 13/59 (22%), Positives = 29/59 (49%)
 Frame = +3

Query: 120 KVKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVET 296
           KV+L++      +   V+++QD   ++G N +A   D      V+   ++  ++R  +T
Sbjct: 64  KVRLMNISYSPASVTAVVKSQDFSRLNGLNGAAFAGDHLAIRRVDGASNVTQDYRKAKT 122


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 300 HTFRLACDSGLCLHQSPRWNPSLRQPPRP 214
           H  R + D+    H+ P   PSL  PP P
Sbjct: 46  HDRRTSTDTTHSRHRYPETPPSLPPPPSP 74


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = -1

Query: 130  NLTLYVSENISSPVITS-------L*IIILMDWRRFKIIKPKLRLLAPLV 2
            NL   +  NI +P  TS       L II ++    + +IKP + +LAP +
Sbjct: 2523 NLVEALKVNIEAPPSTSQDSRRLALLIIRVVSKENYSLIKPHISILAPAI 2572


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 205 LTPRPRRLTKGRIPTWRL 258
           +TP  RRLTK  I +W +
Sbjct: 493 ITPVVRRLTKAPISSWHI 510


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 188  IVLCSDHGLAGDFINNFVDQLNFIRIREHLVT--SYNILIDYHFDG 57
            +++ S+  L  D  +   ++L  IR ++  +   +Y I+ DY FDG
Sbjct: 884  LIINSNGKLPHDVRHQATEKLESIRKQDVAIAHNAYYIITDYDFDG 929


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 242 IRPFVSLLGRGVKSINVD 189
           IRPFV + GRG  SI ++
Sbjct: 342 IRPFVIVTGRGNHSIGLE 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,810
Number of Sequences: 5004
Number of extensions: 27118
Number of successful extensions: 109
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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