Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F17
(322 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 63 4e-11
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 30 0.47
07_03_0808 - 21668100-21669092 29 0.62
10_01_0108 + 1337009-1338190 29 0.81
12_02_0630 + 21367620-21367695,21367890-21367976,21368287-213683... 28 1.4
04_03_0964 - 21290107-21290667,21290780-21291130,21291230-212914... 28 1.4
04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706 27 2.5
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420... 27 3.3
11_06_0024 - 19331250-19331380,19331412-19331484,19331571-193317... 27 3.3
08_01_0291 - 2337777-2338343 27 4.3
09_02_0076 - 3959572-3960279 26 7.6
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 26 7.6
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526... 26 7.6
06_03_1227 + 28557855-28558323,28558426-28558586,28558850-285589... 26 7.6
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70... 26 7.6
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047... 26 7.6
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 26 7.6
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 63.3 bits (147), Expect = 4e-11
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Frame = +3
Query: 66 MIIYKDVITGDEMFSDTYKVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 236
M++Y+D++TGDE+ SD++ + I+ +++EV GK V++ D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 237 TDSNVETGVDIVLNHRLVETYAFGDKK 317
D VDIV RL E F DKK
Sbjct: 60 VDDQAVKVVDIVDTFRLQEQPPF-DKK 85
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 29.9 bits (64), Expect = 0.47
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 217 AEGLNPSMWISSCVLITVLPVTS*ITSSINLTLYVSENISSPVI 86
+EG+N S + CV++ LP S + T+ ENIS PV+
Sbjct: 662 SEGINFSDGMGRCVVMVGLPYPSPSDVELTETIKYIENISKPVL 705
>07_03_0808 - 21668100-21669092
Length = 330
Score = 29.5 bits (63), Expect = 0.62
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 318 ISYRQRHTFRLACDSGLCLHQ--SPRWNPSLRQPPRPR 211
+S R RH ++ SGL LH +PR P R+P RPR
Sbjct: 108 LSRRWRHVWKWV--SGLFLHHYPAPRLQPRARRPRRPR 143
>10_01_0108 + 1337009-1338190
Length = 393
Score = 29.1 bits (62), Expect = 0.81
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 60 IKMIIYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDDI 191
I + + + E ++D YK +L+D I E+ K V++ +I
Sbjct: 131 IGLTFIRSIHLSSEAYNDAYKFRLLDSCIDEIGEKNVVQVVSNI 174
>12_02_0630 +
21367620-21367695,21367890-21367976,21368287-21368333,
21368413-21368470,21369056-21369166,21369353-21369478,
21370123-21370182,21370966-21371186,21371274-21371460,
21371939-21372063
Length = 365
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +3
Query: 60 IKMIIYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEAD 230
+K+++ + T D++ D +++ +++ ++ +DD+HI G P A+ D
Sbjct: 14 LKLVMMESHATPDDLTGDKGAAQILHRQLFDAHEPNLL-DEDDMHIFGSKPMADPLD 69
>04_03_0964 -
21290107-21290667,21290780-21291130,21291230-21291411,
21291505-21291631,21291956-21292168,21292627-21292755,
21292891-21293616
Length = 762
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 132 IDEVIYEVTGKTVIRTQDDIHIDGFNP 212
+ E ++EVTGK + DD + DG +P
Sbjct: 639 LSETVFEVTGKDKSMSDDDDNTDGADP 665
>04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706
Length = 187
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 142 LFMKSPARP*SEHKTISTLMDLTPRPRRLTKGRIPTWRL 258
L + +PA P + H+ L+ +PR L R P WRL
Sbjct: 6 LLLANPAAPTARHQ--HRLLQQRRQPRLLASSRPPRWRL 42
>11_06_0025 -
19341127-19341339,19341426-19341620,19341912-19342088,
19342505-19342672,19343533-19343574,19344129-19344214,
19345218-19345545
Length = 402
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 57 SIKMIIYKDVITGDEMFSDTYKVKLIDE 140
+ K+I + + DEMFSD + KL+D+
Sbjct: 318 AFKIICSRKIDKSDEMFSDDVRSKLLDD 345
>11_06_0024 -
19331250-19331380,19331412-19331484,19331571-19331768,
19333317-19333484,19334187-19334263,19335321-19335423
Length = 249
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 57 SIKMIIYKDVITGDEMFSDTYKVKLIDE 140
+ K+I + + DEMFSD + KL+D+
Sbjct: 168 AFKIICSRKIDKSDEMFSDDVRSKLLDD 195
>08_01_0291 - 2337777-2338343
Length = 188
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 179 CSDHGLAGDFINNFVDQLN 123
CS GLAGD++N +D N
Sbjct: 134 CSFDGLAGDYLNGLIDVEN 152
>09_02_0076 - 3959572-3960279
Length = 235
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -3
Query: 164 LAGDFINNFVDQLNFIRIREHLVTSYNILID 72
+A DF NNF D++++ +R L+ +L++
Sbjct: 152 VAQDFFNNFQDRIDY-AVRHALINQSGVLVN 181
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 189 IHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGDKK 317
+ I+ N S EE +E ++ VD+ LN +E +G+KK
Sbjct: 711 VSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752
>08_01_1013 +
10251463-10251858,10252366-10252434,10252545-10252652,
10253261-10253326,10254258-10254395,10255047-10255094,
10256292-10256398,10257228-10257302,10258317-10258368,
10258485-10259068,10259944-10260150,10260236-10260407
Length = 673
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 180 QDDIHIDGFNPSAEEADEGTDS-NVETGVDIVLNHRLVETY 299
+D + +DG PSA + EG + VE D VL R ++ Y
Sbjct: 83 EDSMEVDGVGPSASASAEGVGAEEVEDEEDYVL--REIDVY 121
>06_03_1227 +
28557855-28558323,28558426-28558586,28558850-28558929,
28559015-28559150,28559239-28559388,28559717-28559899
Length = 392
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 291 RLACDSGLCLHQSPRWNPSLRQ 226
RLA + LC+ S +W PS+ +
Sbjct: 311 RLAFVASLCIRSSAKWRPSMTE 332
>04_01_0070 -
706640-706747,707221-707307,707397-707502,707585-707693,
707766-708145,708508-708601,709351-709475,709633-709674,
710822-710892,710979-711060,711157-711277,712404-712713
Length = 544
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 286 SL*FRTMSTPVSTLESVPSSASSAEGLNPSM 194
SL FR + P+S L S+ +S + GLN S+
Sbjct: 317 SLPFRIVQAPLSDLCSLQNSVDVSSGLNDSI 347
>02_05_0982 - 33303500-33304011,33304091-33304208,33304606-33304726,
33304811-33304877,33304968-33305102,33305186-33305297,
33305852-33306009,33306177-33306300,33306406-33306542,
33307284-33307403,33307878-33308025,33308674-33308931,
33309090-33309127,33309232-33309674,33309761-33309845,
33310063-33310123,33310277-33310453,33311611-33312408,
33314394-33314693
Length = 1303
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -3
Query: 200 INVDIVLCSDHGLAGDFINNFVDQLNFIRIREHLVTSYNILIDYHFDGLEAI*NNKTET 24
++ D V+ SD GL I F+D L + L S+N+L + + L+ I ++ ++T
Sbjct: 856 VSEDEVIVSDCGLQDLSITPFLDALKLHKTIAVLDLSHNMLGNQTIERLQQIFSSSSQT 914
>02_05_0975 + 33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -3
Query: 200 INVDIVLCSDHGLAGDFINNFVDQLNFIRIREHLVTSYNILIDYHFDGLEAI*NNKTET 24
++ D V+ SD GL I F+D L + L S+N+L + + L+ I ++ ++T
Sbjct: 894 VSEDEVIVSDCGLQDLSITPFLDALRLHKTIAVLDLSHNMLGNQTIERLQQIFSSSSQT 952
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,028,947
Number of Sequences: 37544
Number of extensions: 176786
Number of successful extensions: 560
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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