Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F17
         (322 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.36 
SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.6  
SB_25963| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.6  
SB_34975| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   4.5  
SB_2878| Best HMM Match : rve (HMM E-Value=0.094)                      27   4.5  
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)               26   5.9  
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)                26   5.9  
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.9  
SB_55749| Best HMM Match : SRCR (HMM E-Value=0)                        26   7.9  
SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.9  
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)                26   7.9  
SB_28695| Best HMM Match : Ras (HMM E-Value=0)                         26   7.9  
SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    26   7.9  

>SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 186 DIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVE 293
           D ++ G N SAE+A +  +    TG ++V+ +RLVE
Sbjct: 47  DENLIGGNKSAEDACDDVEDGCTTGCNVVMANRLVE 82


>SB_2262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 688

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = -1

Query: 313 LSPKAYVSTSL*FRTMSTPVSTLESVPSSASSAEGLNPSMWISSCVLITVLPVTS*ITSS 134
           ++PK   + +   +  S P+ T+   P   +S   L       +  L  +LP  S +T  
Sbjct: 49  ITPKPATAPTTTTQVRSRPLPTILPAPPKHTSNPPLTTITTGGTRRLTQILPAPSKVTLP 108

Query: 133 INLTLYVSENISSPVITS 80
            +  +   + +SSPV+T+
Sbjct: 109 ASTVVLPVKTLSSPVVTT 126


>SB_25963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/40 (32%), Positives = 28/40 (70%)
 Frame = -1

Query: 178 VLITVLPVTS*ITSSINLTLYVSENISSPVITSL*IIILM 59
           ++IT++ +T+ IT  I++T+ ++  I +  IT + III++
Sbjct: 117 IIITIIIITNTITIIISITIIITIIIITNTITIIFIIIII 156


>SB_34975| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 909

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 160 PVTS*ITSSINLTLYVSENISSPVITSL 77
           PVT+   + + L +Y SE ++SP IT+L
Sbjct: 278 PVTTSNKACVRLEVYGSEGVASPEITNL 305


>SB_2878| Best HMM Match : rve (HMM E-Value=0.094)
          Length = 291

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 315 SYRQRHTFRLACDSGL-CLHQSPRWNPSLRQPPRPRG*IHQCGYRLVF*SR 166
           +Y   + +++  D+      + PR  PS RQPP     IH C +R ++ +R
Sbjct: 81  TYTYTYKYKMIADNCRPASERPPRHCPSRRQPPVGDIAIHYCRHRPIYYAR 131


>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
          Length = 410

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -1

Query: 271 TMSTPVSTLESVP----SSASSAEGLNPSMWISSCVLITVLPVTS*ITSSINLTLYVSEN 104
           T+S P   L++ P    SS  S  G   S  +   V ++ L V++   SS+N    V+  
Sbjct: 301 TLSPPKCELQNSPLSFESSRESPSGTEESKPLGQLVTLSPLQVSAKTGSSLNDQAEVAMV 360

Query: 103 ISSPVITSL 77
             SP++ SL
Sbjct: 361 RVSPILASL 369


>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
          Length = 617

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 69  IIYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDDIHIDGF 206
           ++Y   +T   MF  +  +K    V +      +   ++DI+ DGF
Sbjct: 239 VVYHSTLTEPPMFLSSLSIKFTGRVKFVYCRSHLKHRKEDINFDGF 284


>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 135 DEVIYEVTGKTVIRTQDDIHIDGFNP 212
           D + +E+    +IRTQ D  +D  NP
Sbjct: 198 DGMFHEILNGLIIRTQQDYDVDTTNP 223


>SB_55749| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1224

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 36  IILNRLQSIKMIIYKDVITGDEMFSD 113
           II+NR +  + ++ ++V+ GDE+ +D
Sbjct: 311 IIINRKRGFEPVVIENVLEGDELRTD 336


>SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 578

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 147 YEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDS 245
           +E      I   DD   DGF+ S+E  DEG +S
Sbjct: 163 WECVASVAIAESDD---DGFSSSSESEDEGEES 192


>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
          Length = 2386

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 150  EVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNVETGVDIVLN 278
            + T K    ++D + ++      E  +EGTD++V +G ++ +N
Sbjct: 1995 DTTNKDNSDSEDSVIVEEEKEEEELNEEGTDASVVSGEELFVN 2037


>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1058

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/61 (24%), Positives = 36/61 (59%)
 Frame = +3

Query: 72  IYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNV 251
           +Y+++    ++  DTY+ +L DE+  +  G+  I+T+++  ++  N + EE    + S++
Sbjct: 614 LYEEMEQQIKVVRDTYQQELEDEIAMKEKGEQEIKTENEKLLEK-NWTLEEQLNSSVSSL 672

Query: 252 E 254
           E
Sbjct: 673 E 673


>SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 1038

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +3

Query: 144 IYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETY 299
           +YE +GK +   Q  + +DG NP         D N+   + ++  H + + Y
Sbjct: 554 VYEESGKLI--GQRILPVDGLNPGYRHIKLRNDCNLPLTLPVLFVHIITKDY 603


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,276,171
Number of Sequences: 59808
Number of extensions: 205638
Number of successful extensions: 674
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)