Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F17
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   4.8  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   4.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   6.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   8.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   8.4  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 96  DEMFSDTYKVKLIDEVI 146
           +E++SD Y    IDE++
Sbjct: 20  EELYSDKYDYVNIDEIL 36


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 96  DEMFSDTYKVKLIDEVI 146
           +E++SD Y    IDE++
Sbjct: 20  EELYSDKYDYVNIDEIL 36


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 10/36 (27%), Positives = 13/36 (36%)
 Frame = +3

Query: 81  DVITGDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDD 188
           D I     F D  K+K I       +G T     +D
Sbjct: 825 DAILDQNKFKDIIKIKTIGSTYMAASGITESAESED 860


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -1

Query: 121 LYVSENISSPVITSL*IIILMDWRRFKIIK 32
           LYVS  I++ V  +  I + + W + ++++
Sbjct: 233 LYVSGFITTEVAGTYAIFLYISWHQKELVR 262


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 229 SASSAEGLNPSMWISSCV 176
           S SS + L+P   +SSCV
Sbjct: 905 SESSKKVLSPGELLSSCV 922


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,622
Number of Sequences: 438
Number of extensions: 1873
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)