Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F17
(322 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16640.1 68416.m02127 translationally controlled tumor family... 66 5e-12
At3g05540.1 68416.m00607 translationally controlled tumor family... 49 6e-07
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 28 1.6
At5g48450.1 68418.m05991 multi-copper oxidase type I family prot... 27 2.8
At2g15300.1 68415.m01745 leucine-rich repeat transmembrane prote... 27 2.8
At1g47270.1 68414.m05233 F-box family protein / tubby family pro... 27 3.7
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ... 27 3.7
At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /... 26 4.9
At1g23020.1 68414.m02876 ferric-chelate reductase, putative simi... 26 4.9
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 26 6.5
At3g08870.1 68416.m01031 lectin protein kinase, putative similar... 25 8.6
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 25 8.6
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 25 8.6
At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protei... 25 8.6
>At3g16640.1 68416.m02127 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 168
Score = 66.1 bits (154), Expect = 5e-12
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Frame = +3
Query: 66 MIIYKDVITGDEMFSDTYKVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 236
M++Y+D++TGDE+ SD++ K I+ +++EV GK V D++I G NPSAEE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59
Query: 237 TDSNVETGVDIVLNHRLVETYAFGDKK 317
D + + VDIV RL E + DKK
Sbjct: 60 VDDSTQKVVDIVDTFRLQEQPTY-DKK 85
>At3g05540.1 68416.m00607 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 156
Score = 49.2 bits (112), Expect = 6e-07
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +3
Query: 66 MIIYKDVITGDEMFSDTYKVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 236
M++Y+D++TGDE+ SD++ K I+ +++EV GK NPS EE DEG
Sbjct: 1 MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGK--------------NPSGEEGGEDEG 46
Query: 237 TDSNVETGVDIVLNHRLVETYAFGDKK 317
D VDI+ RL E +F DKK
Sbjct: 47 VDDQAVKVVDIIDTFRLQEQPSF-DKK 72
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 93 GDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNVETG 260
G+ S K +++D V+ +T T + +GF P+AEEAD+G S + G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE-EGFLPTAEEADDGIGSMMMGG 292
>At5g48450.1 68418.m05991 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase; also
similar to l-ascorbate oxidase and pollen-specific
protein
Length = 550
Score = 27.1 bits (57), Expect = 2.8
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +3
Query: 18 SRSFGFIILNRLQSIKMIIYKDVITGD-EMFSDTYKVKLIDEVIYEVTGKTVIRTQDDIH 194
S +G II+N I + + GD +F + K ++ +V K +R D I
Sbjct: 137 SGGYGGIIVNNRAIIPVPFA--LPDGDVTLFISDWYTKSHKKLRKDVESKNGLRPPDGIV 194
Query: 195 IDGFNPSAEEADEGTDSNVETG 260
I+GF P A NVE G
Sbjct: 195 INGFGPFASNGSPFGTINVEPG 216
>At2g15300.1 68415.m01745 leucine-rich repeat transmembrane protein
kinase, putative
Length = 744
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 24 SFGFIILNRLQSIKMIIYKDVITGDEMFSDTYKVKLID-EVIYEV 155
SFG I+L L I + +D++ E ++ +KL+D E+ EV
Sbjct: 660 SFGVILLELLTGIVFSVDRDLVRDSETDEKSWFLKLVDGEIRVEV 704
>At1g47270.1 68414.m05233 F-box family protein / tubby family
protein contains Pfam profiles: PF00646 F-box domain,
PF01167 Tub family; similar to Chain A, C-Terminal
Domain Of Mouse Brain Tubby Protein Length(GI:6730158)
[Mus musculus]; similar to phosphodiesterase (GI:467578)
[Mus musculus]; similar to Tubby protein homolog
(Swiss-Prot:O88808) [Rattus norvegicus]
Length = 413
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 241 SVPSSASSAEGLNPSMWI 188
SV SS S+ EGLN S+W+
Sbjct: 53 SVSSSLSTNEGLNQSIWV 70
>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative Similar to elongation factor
1-gamma (gb|EF1G_XENLA). ESTs
gb|T20564,gb|T45940,gb|T04527 come from this gene
Length = 414
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 201 GFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFG 308
GF P + A+EG S ++ +D + H TY G
Sbjct: 118 GFMPYSAPAEEGAISTLKRALDALNTHLTSNTYLVG 153
>At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase PG1 [Glycine max]
GI:5669846; contains PF00295: Glycosyl hydrolases family
28
Length = 449
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +3
Query: 69 IIYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSN 248
I+ V+ + F + V + V++ VT ++ D + DG +P + DS
Sbjct: 193 ILVSHVVLQNSPFWTLHPVYCSNVVVHHVT---ILAPTDSYNTDGIDPDSSSNVCIEDSY 249
Query: 249 VETGVDIV 272
+ TG D+V
Sbjct: 250 ISTGDDLV 257
>At1g23020.1 68414.m02876 ferric-chelate reductase, putative similar
to ferric-chelate reductase (FRO1) [Pisum sativum]
GI:15341529; contains Pfam profile PF01794: Ferric
reductase like transmembrane component
Length = 693
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 263 YTSLHVGIRPFVSLLGRGVKSINVDIVLC 177
+T++H G RP ++ L G+K +V +++C
Sbjct: 635 FTNIHYGERPNLNKLLVGLKGSSVGVLVC 663
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 250 TLESVPSSASSAEGLNPSMWISSCVLITVLPVTS*ITSSINLTL 119
+L +PSS S L ++W+S C+ + V+P + S +T+
Sbjct: 661 SLVEIPSSFSHLHKLK-NLWMSYCINLQVIPAHMNLVSLERVTM 703
>At3g08870.1 68416.m01031 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 693
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 270 LCLHQSPRWNPSLR 229
LC HQ P++ PS+R
Sbjct: 617 LCCHQKPKFRPSMR 630
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +3
Query: 186 DIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGDKK 317
D+ D N + + T DI+L LVE+ DKK
Sbjct: 104 DLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKK 147
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +3
Query: 186 DIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGDKK 317
D+ D N + + T DI+L LVE+ DKK
Sbjct: 104 DLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKK 147
>At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protein
contains Pfam profiles: PF01411 tRNA synthetases class
II (A), PF02272 DHHA1 domain
Length = 1003
Score = 25.4 bits (53), Expect = 8.6
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +3
Query: 42 LNRLQSIKMIIYKDVITGDEMFS--DTYKVKL-IDEVIYEVTGKTVIRTQDDIHIDGFNP 212
+ + + + + ++GD+ F DTY L + +++ E G V +DGFN
Sbjct: 443 IEKFRKAGQAVQGNTLSGDDAFILWDTYGFPLDLTQLMAEERGLLV-------DVDGFNK 495
Query: 213 SAEEADEGTDS--NVETGVDIVLN 278
+ EEA E + S N + G IV++
Sbjct: 496 AMEEARERSRSAQNKQAGGAIVMD 519
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,253,407
Number of Sequences: 28952
Number of extensions: 145011
Number of successful extensions: 436
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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