Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F16
         (490 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.49 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.49 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.49 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.49 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   6.0  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   7.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.9  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   7.9  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   7.9  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 200  HLGMHRDRGSKSDANDAKAPVLSHVPQRQ 114
            HLG   + G    AN+  +  +S VPQ +
Sbjct: 1177 HLGAVTEEGGDESANETDSETVSTVPQNK 1205


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 200  HLGMHRDRGSKSDANDAKAPVLSHVPQRQ 114
            HLG   + G    AN+  +  +S VPQ +
Sbjct: 1177 HLGAVTEEGGDESANETDSETVSTVPQNK 1205


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 200  HLGMHRDRGSKSDANDAKAPVLSHVPQRQ 114
            HLG   + G    AN+  +  +S VPQ +
Sbjct: 1177 HLGAVTEEGGDESANETDSETVSTVPQNK 1205


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 200  HLGMHRDRGSKSDANDAKAPVLSHVPQRQ 114
            HLG   + G    AN+  +  +S VPQ +
Sbjct: 1177 HLGAVTEEGGDESANETDSETVSTVPQNK 1205


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 360 GLVEPKVPDGSPQAPD 313
           G + P +P  +PQ PD
Sbjct: 36  GYLRPLIPATAPQKPD 51


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 402 LNIGVGLIVLNKYFPPVANSRRASP 476
           LN+G+      K+  P  +S R+SP
Sbjct: 209 LNLGLDFPYQGKFEVPTKSSPRSSP 233


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 464 PCITCACE 487
           PC TC CE
Sbjct: 692 PCTTCFCE 699


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 92  RNIDPLPVPRRRSHRVSGK*RRACWTSMPR 3
           +N +PLP PRR +  V  +  + C +  P+
Sbjct: 108 QNNNPLPSPRRVAVPVLVRDGKPCLSGGPK 137


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 143 PVLSHVPQRQLYNTLVARNIDPLPVPRRRSHR 48
           P+L  +PQR       A N  P   P   S R
Sbjct: 197 PLLVPIPQRTASTASSASNYSPSQSPEPESVR 228


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,538
Number of Sequences: 336
Number of extensions: 2046
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)