Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F16
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   1.1  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   2.7  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    25   4.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.1  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 256 ICTVLSISLCLGIGISVRPTLVCIGI 179
           IC +LS  LC  I IS +  LV IGI
Sbjct: 143 ICPMLSFLLCFRIIISQKAALVSIGI 168


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 286 GRMSI-CVRVSICTVLSISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLS 119
           GR SI CV+V I     I   + +  SV   ++C+G+  +  T+   R    L SLS
Sbjct: 536 GRYSIGCVKV-IDPETEIDYAVRVAKSVDCVILCVGLTAEWETEGEDRKTMTLPSLS 591


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 72  WQRVNITCHERIIQL----TLRDMRQHRCLCVVCVA 167
           ++R++   H RI  L    TLRD+RQ    C+V V+
Sbjct: 279 YERIHSDIHVRITNLPTCFTLRDLRQSHLNCLVRVS 314


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 348  PKVPDGSPQAPDPEPQP 298
            PK   G+P AP P P P
Sbjct: 1053 PKSSSGAPSAPPPVPAP 1069


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,785
Number of Sequences: 5004
Number of extensions: 32861
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)