Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F16
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0376 - 3320621-3321151                                           32   0.22 
01_07_0348 + 42910560-42910880                                         31   0.50 
11_03_0089 + 9794673-9794747,9795216-9795308,9795611-9795772           28   4.6  
03_04_0089 - 17217235-17217461,17218298-17218418                       28   4.6  
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    28   4.6  
01_06_1530 - 38019997-38020011,38020705-38020867,38021126-380212...    28   4.6  
11_06_0722 - 26678873-26680843                                         27   6.1  
11_06_0368 + 22756988-22758205                                         27   6.1  
01_01_0050 - 382451-382864,382950-383020,383131-383176,383302-38...    27   8.1  

>08_01_0376 - 3320621-3321151
          Length = 176

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 375 CLSNLGLVEPKVPDGSPQAPDPEPQPRDVA 286
           CLS LGL  P +PD  P    P P P  +A
Sbjct: 33  CLSALGLAAPPLPDEHPAYAPPPPPPASMA 62


>01_07_0348 + 42910560-42910880
          Length = 106

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 24/82 (29%), Positives = 35/82 (42%)
 Frame = +3

Query: 243 RTVQMLTRTQMLMRPLHHAAGALDQELGGSHQAPSVPPIPNYSGIENAEK*SRLNIGVGL 422
           R V +L    MLM     AAGA     GG     SVP   +  G+  AE+     + +G 
Sbjct: 15  RIVALLLLLLMLMLRAAAAAGATTTGAGGGPSGGSVPAGGDAGGVAPAERGGVAAVEIGG 74

Query: 423 IVLNKYFPPVANSRRASPAPAK 488
           +V+        ++R A P  A+
Sbjct: 75  VVVVVAAAAAGSARFAPPLAAR 96


>11_03_0089 + 9794673-9794747,9795216-9795308,9795611-9795772
          Length = 109

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 237 MERTVQMLTRTQMLMRPLHHAAGALDQELGGSHQAPSVPP 356
           +++T Q+  RTQ L+       G L+Q    S   P++PP
Sbjct: 51  LDKTYQVHDRTQNLVARTESLMGRLNQVFASSLPGPALPP 90


>03_04_0089 - 17217235-17217461,17218298-17218418
          Length = 115

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 157 TTQRHRCCLMSLSVNCI 107
           +T RH  CL+SLS++C+
Sbjct: 42  STNRHTLCLLSLSISCL 58


>03_02_0473 +
           8745721-8745994,8746083-8746090,8746232-8746324,
           8746665-8746893,8747314-8747420,8747560-8747622,
           8747883-8747983,8748996-8749090,8749330-8749350,
           8749987-8750082,8750188-8750308,8750415-8750570,
           8750679-8750869,8751207-8751478,8751853-8751954,
           8752006-8752038,8752132-8752308,8752397-8752466,
           8752512-8752585,8752667-8752908,8752983-8753129,
           8753526-8753751,8753893-8753970,8754378-8754521,
           8754829-8755008,8755335-8755394,8755484-8755523,
           8758653-8759137
          Length = 1294

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 195 KVGRTLMPMPRHKLMERTVQMLTRTQMLMRPLHHAAGALDQELGGSHQA 341
           K  +   P P  KL+ R ++   R+    RP+ HAA  + QE+G S  A
Sbjct: 438 KSSKARRPQPLIKLVMRRLESSFRS--FSRPVLHAAARVVQEMGKSRAA 484


>01_06_1530 -
           38019997-38020011,38020705-38020867,38021126-38021211,
           38021297-38022642,38022980-38023193
          Length = 607

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 184 GIGVQRATQTTQRHRCCLMSLSVNCIIRSWHVILTL 77
           G+GV  A    +R R  L   SV+ ++  W V+L L
Sbjct: 25  GVGVATAAAAGRRRRRRLYGFSVSLVVACWVVLLLL 60


>11_06_0722 - 26678873-26680843
          Length = 656

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 109 IIRSWHVILTLCQCHGEDR 53
           II +WH+  TLC+   ED+
Sbjct: 482 IIMAWHIATTLCEVEDEDQ 500


>11_06_0368 + 22756988-22758205
          Length = 405

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 357 LVEPKVPDGSPQAPDPEPQP 298
           L +PK P   P+ P PEP+P
Sbjct: 12  LPKPKPPKPKPKPPKPEPEP 31


>01_01_0050 -
           382451-382864,382950-383020,383131-383176,383302-383333,
           383409-383558,383666-383849,383934-384109,384580-384628,
           384724-384923,385515-385548
          Length = 451

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 384 RSQCLSNLGLVEPKVPDGSPQAPDPEPQPRDVA 286
           R   L   GL + ++ +   + PDP+P   DVA
Sbjct: 56  RRSFLEKKGLTKEEIDEAFRRVPDPQPNSTDVA 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,222,910
Number of Sequences: 37544
Number of extensions: 276383
Number of successful extensions: 1135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)