Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F16
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.89 
SB_43334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_36221| Best HMM Match : Rz1 (HMM E-Value=1.2)                       29   2.1  
SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)              29   2.1  
SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7)                   27   6.3  
SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                27   6.3  
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7)                   27   6.3  
SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7)                   27   6.3  
SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)                   27   6.3  
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)                       27   6.3  
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.3  
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)                   27   6.3  
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7)                   27   6.3  
SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)                   27   6.3  
SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)             27   6.3  
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -1

Query: 271 CVRVSICTVLSISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLSVNCIIR-SW 95
           C+ V++C +LS+  CL + +       C+ + V      T  H C  +S++V+C +  + 
Sbjct: 327 CLSVTVCLLLSVRYCLSVTVH-----CCLSVTVHYCLSVTV-HYC--LSVTVHCCLSVTV 378

Query: 94  HVILTLCQC 68
           H  L++  C
Sbjct: 379 HYCLSVTVC 387



 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = -1

Query: 274 ICVRVSICTVLSISLCLGIGISVRPTL---VCIGIGVQRATQTTQRHRCCLMSLSVNCII 104
           +C+ +++C +LSI++C  + +   P L    C+ + V      T    C L+S+   C +
Sbjct: 156 VCLSITVCPLLSITVCPLLSVCYCPLLSVRYCLSVTVHCCLSVTV---CLLLSVCY-CPL 211

Query: 103 RSWHVILTLCQC 68
            S    L++  C
Sbjct: 212 LSVRYCLSVTVC 223


>SB_43334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 21/67 (31%), Positives = 26/67 (38%)
 Frame = +3

Query: 177 PIPMHTKVGRTLMPMPRHKLMERTVQMLTRTQMLMRPLHHAAGALDQELGGSHQAPSVPP 356
           P+ +H+ +    MP P    M     ML+             G L   LGG  Q P  PP
Sbjct: 305 PVALHSGIPMPQMPFPNFSSMLPVATMLS-------------GGLGPYLGGQMQMPVFPP 351

Query: 357 IPNYSGI 377
            P  SGI
Sbjct: 352 SPPMSGI 358


>SB_36221| Best HMM Match : Rz1 (HMM E-Value=1.2)
          Length = 205

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 372 LSNLGLVEPKVPDGSPQAPDPEPQPRD 292
           LSN  L  P  P   PQ   P P+PRD
Sbjct: 25  LSNDALYSPPPPPAFPQTHRPRPRPRD 51


>SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)
          Length = 974

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -3

Query: 209 RSPHLGMHRDRGSKSDANDAKAPVLSHVPQRQLYNTLVARNIDPLPVPRRRSH 51
           R P L   R RG +   + A A V+S         TL +RN   +P+ R RSH
Sbjct: 486 RHPFLDAARIRGRRHSGDPASAQVISE--------TLSSRNSSSVPIVRERSH 530


>SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7)
          Length = 100

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342 VPDGSPQAPDPEPQPR 295
           +PD S QAP P P+PR
Sbjct: 55  MPDASSQAPQPLPEPR 70


>SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 287

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342 VPDGSPQAPDPEPQPR 295
           +PD S QAP P P+PR
Sbjct: 242 MPDASSQAPQPLPEPR 257


>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342 VPDGSPQAPDPEPQPR 295
           +PD S QAP P P+PR
Sbjct: 214 MPDASSQAPQPLPEPR 229


>SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7)
          Length = 214

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342 VPDGSPQAPDPEPQPR 295
           +PD S QAP P P+PR
Sbjct: 169 MPDASSQAPQPLPEPR 184


>SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7)
          Length = 240

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342 VPDGSPQAPDPEPQPR 295
           +PD S QAP P P+PR
Sbjct: 195 MPDASSQAPQPLPEPR 210


>SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342 VPDGSPQAPDPEPQPR 295
           +PD S QAP P P+PR
Sbjct: 617 MPDASSQAPQPLPEPR 632


>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
          Length = 1213

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342  VPDGSPQAPDPEPQPR 295
            +PD S QAP P P+PR
Sbjct: 1168 MPDASSQAPQPLPEPR 1183


>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
          Length = 603

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
 Frame = -1

Query: 286 GRMSICVRVSICTV---LSISLCLGIGISVRPTL 194
           G+ +I V ++IC++   LS+  C G+GI ++ TL
Sbjct: 417 GKTNILVYIAICSLIGSLSVMGCKGVGIVLKQTL 450


>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1269

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342  VPDGSPQAPDPEPQPR 295
            +PD S QAP P P+PR
Sbjct: 1224 MPDASSQAPQPLPEPR 1239


>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
          Length = 1272

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342  VPDGSPQAPDPEPQPR 295
            +PD S QAP P P+PR
Sbjct: 1227 MPDASSQAPQPLPEPR 1242


>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342 VPDGSPQAPDPEPQPR 295
           +PD S QAP P P+PR
Sbjct: 630 MPDASSQAPQPLPEPR 645


>SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7)
          Length = 269

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342 VPDGSPQAPDPEPQPR 295
           +PD S QAP P P+PR
Sbjct: 224 MPDASSQAPQPLPEPR 239


>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
          Length = 848

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342 VPDGSPQAPDPEPQPR 295
           +PD S QAP P P+PR
Sbjct: 803 MPDASSQAPQPLPEPR 818


>SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)
          Length = 500

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 342 VPDGSPQAPDPEPQPR 295
           +PD S QAP P P+PR
Sbjct: 455 MPDASSQAPQPLPEPR 470


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 203  PHLGMHRDRGSKSDANDAKAPVLSHVPQRQ 114
            P+ G  + RG+ S+A+DA  P+L+  P R+
Sbjct: 1951 PYSGSWK-RGNASNASDASGPILNPAPPRK 1979


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,853
Number of Sequences: 59808
Number of extensions: 285964
Number of successful extensions: 1049
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)