Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F16
         (490 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   1.1  
AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase...    23   7.4  
AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase...    23   7.4  
DQ518577-1|ABF66619.1|  318|Anopheles gambiae putative secreted ...    22   9.8  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    22   9.8  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    22   9.8  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 147 LCVVCVAL*TPIPMHTKVGRTLMPMPRHKLMERTVQMLTRTQMLMRPLHHAAGALDQELG 326
           +CV  + L   I   +    T+ P  R   +    ++L   + + +PLHH + A  + + 
Sbjct: 317 ICVTVIVL--NIHFRSPQTHTMAPWVRTIFINHLPKLLVMRRPIYQPLHHFSAASQRFML 374

Query: 327 GSHQA--PSVPPIP 362
            S  +    +PP+P
Sbjct: 375 RSCNSLGDHIPPLP 388


>AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase
           isoform 2 protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 360 GLVEPKVPDGSPQAPD 313
           G + P +PD +PQ P+
Sbjct: 46  GYLRPLIPDEAPQQPE 61


>AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase
           isoform 1 protein.
          Length = 515

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 360 GLVEPKVPDGSPQAPD 313
           G + P +PD +PQ P+
Sbjct: 77  GYLRPLIPDEAPQQPE 92


>DQ518577-1|ABF66619.1|  318|Anopheles gambiae putative secreted
           carbonic anhydrase protein.
          Length = 318

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 200 HLGMHRDRGSKSDANDAKAPVLSHVPQR 117
           H G   +RG++   ND + P+  H+  R
Sbjct: 131 HWGDKNNRGAEHVLNDIRYPLEMHIIHR 158


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 143 PVLSHVPQRQLYNTLVARNIDPL 75
           P+LSH+P   LY   +   +  L
Sbjct: 928 PLLSHIPMPVLYGVFLYMGVSAL 950


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 43  DTRCDLRRGTGRGSILR 93
           DTR   RRGT  G+ LR
Sbjct: 866 DTRVHSRRGTAAGAQLR 882


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 487,444
Number of Sequences: 2352
Number of extensions: 8728
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43131618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)