Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F16
(490 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S81242-1|AAB36005.1| 58|Homo sapiens EWS-CHN fusion gene protein. 33 0.53
AK095631-1|BAC04594.1| 134|Homo sapiens protein ( Homo sapiens ... 33 0.70
AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane hel... 32 0.93
AL121845-12|CAI21885.1| 589|Homo sapiens zinc finger and BTB do... 29 6.5
AK131482-1|BAD18627.1| 589|Homo sapiens protein ( Homo sapiens ... 29 6.5
AB058761-1|BAB47487.2| 2469|Homo sapiens KIAA1858 protein protein. 29 6.5
M29474-1|AAA60248.1| 1043|Homo sapiens RAG1 protein. 29 8.6
BC037344-1|AAH37344.1| 931|Homo sapiens RAG1 protein protein. 29 8.6
AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens ... 29 8.6
AJ007041-1|CAB45385.1| 2715|Homo sapiens trithorax homologue 2 p... 29 8.6
AF186605-1|AAD56420.1| 2605|Homo sapiens MLL2 protein protein. 29 8.6
AF104918-1|AAD17932.1| 1010|Homo sapiens myeloid/lymphoid leukem... 29 8.6
AB002302-1|BAA20763.3| 2415|Homo sapiens KIAA0304 protein protein. 29 8.6
>S81242-1|AAB36005.1| 58|Homo sapiens EWS-CHN fusion gene protein.
Length = 58
Score = 33.1 bits (72), Expect = 0.53
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -2
Query: 390 SQRSQCLSNLGLVEPKVPDGSPQAPDPEPQP 298
SQ SQ S+ G +P +GSP +P PEP P
Sbjct: 1 SQYSQQSSSYGQQKPTAEEGSPASPGPEPGP 31
>AK095631-1|BAC04594.1| 134|Homo sapiens protein ( Homo sapiens
cDNA FLJ38312 fis, clone FCBBF3021506. ).
Length = 134
Score = 32.7 bits (71), Expect = 0.70
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = -1
Query: 292 CSGRMSICVRVSICTVLSISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLSVN 113
C R +CV + +C + + +C+ + + VR ++C+ + V H C + + V
Sbjct: 9 CMCRWCLCVCIYMCVCVPVCMCVYVCVYVRICVICVCVCV-----FVCAHMCSCVFVYV- 62
Query: 112 CIIRSWHVILTLCQC 68
CI +V + +C C
Sbjct: 63 CICVCLYVCVFVCVC 77
>AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane helix
receptor protein.
Length = 346
Score = 32.3 bits (70), Expect = 0.93
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = -1
Query: 280 MSICVRVSICTVLSISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLSVNCIIR 101
+S+CV VS+C L + LC+ + +SV VC+ + + + + C + +SV+ +
Sbjct: 79 VSVCVYVSVCMYLCVFLCVCVYVSVS---VCLCVYLHISVYLCV-YVCICVCVSVSLCV- 133
Query: 100 SWHVILTLCQC 68
S L+LC C
Sbjct: 134 SVCACLSLCVC 144
Score = 29.5 bits (63), Expect = 6.5
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = -1
Query: 280 MSICVRVSICTVLSISLCLGIGISVRPTL-VCIGIGVQRATQTTQRHRCCLMSLSVNCII 104
+S+C+ + +C + +S+C+ I +SV + VC+ + V C + +S+ C+
Sbjct: 13 VSVCLYLYVCVCICVSVCVCICVSVCVCICVCVSVFVCVCICV-----CVCVCVSM-CVS 66
Query: 103 RSWHVILTLCQC 68
S V L LC C
Sbjct: 67 ISVCVYLCLCVC 78
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = -1
Query: 274 ICVRVSICTVLSISLCLGIGISVRPTL---VCIGIGVQRATQTTQRHRCCLMSLSVNCII 104
ICV V +C +S+ +C+ + +SV + VC+ + V + CL C+
Sbjct: 25 ICVSVCVCICVSVCVCICVCVSVFVCVCICVCVCVCVSMCVSISVCVYLCLCVCVSVCVY 84
Query: 103 RS--WHVILTLCQC 68
S ++ + LC C
Sbjct: 85 VSVCMYLCVFLCVC 98
>AL121845-12|CAI21885.1| 589|Homo sapiens zinc finger and BTB
domain containing 46 protein.
Length = 589
Score = 29.5 bits (63), Expect = 6.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 81 VNITCHERIIQLTLRDMRQHRCLCVVCVAL 170
+ IT H R + L + RQH LC VCV +
Sbjct: 8 MEITSHYRHLLRELNEQRQHGVLCDVCVVV 37
>AK131482-1|BAD18627.1| 589|Homo sapiens protein ( Homo sapiens
cDNA FLJ16656 fis, clone TESTI4038779, weakly similar
to Rattus norvegicus zinc finger protein RIN ZF (RINZF).
).
Length = 589
Score = 29.5 bits (63), Expect = 6.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 81 VNITCHERIIQLTLRDMRQHRCLCVVCVAL 170
+ IT H R + L + RQH LC VCV +
Sbjct: 8 MEITSHYRHLLRELNEQRQHGVLCDVCVVV 37
>AB058761-1|BAB47487.2| 2469|Homo sapiens KIAA1858 protein protein.
Length = 2469
Score = 29.5 bits (63), Expect = 6.5
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = -3
Query: 203 PHLGMHRDRGSKSDANDAKAPVLSHVPQRQLYNTLVARNIDPLPVPRRRSHRVSGK*R 30
P L H+ R + P + +P +Q L A+ P PR++SHRVSGK R
Sbjct: 1001 PGLSRHKARKHRPHPGAPAEPSPAALPAQQPLEPL-AQKCQP---PRKKSHRVSGKER 1054
>M29474-1|AAA60248.1| 1043|Homo sapiens RAG1 protein.
Length = 1043
Score = 29.1 bits (62), Expect = 8.6
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 207 TLMPMPRHKLMERTVQMLTRTQMLMRPLHHAAGALDQELGGSHQAPSVPPIPNYS 371
T + ++ M RTV+ +T Q + +PLH A L G H PP+ N S
Sbjct: 477 TFLSCSQYHKMYRTVKAITGRQ-IFQPLHALRNAEKVLLPGYHHFEWQPPLKNVS 530
>BC037344-1|AAH37344.1| 931|Homo sapiens RAG1 protein protein.
Length = 931
Score = 29.1 bits (62), Expect = 8.6
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 207 TLMPMPRHKLMERTVQMLTRTQMLMRPLHHAAGALDQELGGSHQAPSVPPIPNYS 371
T + ++ M RTV+ +T Q + +PLH A L G H PP+ N S
Sbjct: 477 TFLSCSQYHKMYRTVKAITGRQ-IFQPLHALRNAEKVLLPGYHHFEWQPPLKNVS 530
>AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ45585 fis, clone BRTHA3013882. ).
Length = 201
Score = 29.1 bits (62), Expect = 8.6
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -1
Query: 292 CSGRMSICVRVSICTVLSISLCLGIGISVRPT-LVCIGIGV-QRATQTTQRHRCCLMSLS 119
C +S+C+ V +C +S+ LC+ + + V VC+ + V H C + L
Sbjct: 61 CVCLVSVCLCVCLCVCVSVCLCVCLHLCVCVCGFVCLCLCVCVCLCVCVCLHLCVCVGLC 120
Query: 118 VN-CIIRSWHVILTLCQC 68
V+ C S V L +C C
Sbjct: 121 VSVCFCVSVCVCLCVCVC 138
>AJ007041-1|CAB45385.1| 2715|Homo sapiens trithorax homologue 2
protein.
Length = 2715
Score = 29.1 bits (62), Expect = 8.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 339 PDGSPQAPDPEPQPRD 292
P G+P+AP+PEP P D
Sbjct: 670 PLGAPEAPEPEPPPAD 685
>AF186605-1|AAD56420.1| 2605|Homo sapiens MLL2 protein protein.
Length = 2605
Score = 29.1 bits (62), Expect = 8.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 339 PDGSPQAPDPEPQPRD 292
P G+P+AP+PEP P D
Sbjct: 560 PLGAPEAPEPEPPPAD 575
>AF104918-1|AAD17932.1| 1010|Homo sapiens myeloid/lymphoid leukemia
2 protein.
Length = 1010
Score = 29.1 bits (62), Expect = 8.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 339 PDGSPQAPDPEPQPRD 292
P G+P+AP+PEP P D
Sbjct: 8 PLGAPEAPEPEPPPAD 23
>AB002302-1|BAA20763.3| 2415|Homo sapiens KIAA0304 protein protein.
Length = 2415
Score = 29.1 bits (62), Expect = 8.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 339 PDGSPQAPDPEPQPRD 292
P G+P+AP+PEP P D
Sbjct: 370 PLGAPEAPEPEPPPAD 385
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,665,805
Number of Sequences: 237096
Number of extensions: 1369993
Number of successful extensions: 5492
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5430
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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