Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F16
(490 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 30 0.78
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 30 0.78
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 30 0.78
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF039720-3|AAB96697.1| 281|Caenorhabditis elegans Collagen prot... 28 4.2
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 27 7.3
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 27 7.3
Z81117-2|CAB03314.2| 343|Caenorhabditis elegans Hypothetical pr... 27 9.7
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 30.3 bits (65), Expect = 0.78
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +3
Query: 96 HERIIQLTLRDMRQHRCLCVVCVAL*TPIPMHTKVGRTLMPMPRHKLMERTVQMLTRTQM 275
+E I+ ++++++ ++ ++ P+P TKV +MPM ++ E + TR +
Sbjct: 195 NEPIVPEVMKEIKEIETWILMLLSSPVPVPGKTKVQIEVMPMDLSQVFEFALPDHTRFTL 254
Query: 276 LMRPLH 293
+ PLH
Sbjct: 255 IDFPLH 260
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 30.3 bits (65), Expect = 0.78
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +3
Query: 96 HERIIQLTLRDMRQHRCLCVVCVAL*TPIPMHTKVGRTLMPMPRHKLMERTVQMLTRTQM 275
+E I+ ++++++ ++ ++ P+P TKV +MPM ++ E + TR +
Sbjct: 195 NEPIVPEVMKEIKEIETWILMLLSSPVPVPGKTKVQIEVMPMDLSQVFEFALPDHTRFTL 254
Query: 276 LMRPLH 293
+ PLH
Sbjct: 255 IDFPLH 260
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 30.3 bits (65), Expect = 0.78
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +3
Query: 96 HERIIQLTLRDMRQHRCLCVVCVAL*TPIPMHTKVGRTLMPMPRHKLMERTVQMLTRTQM 275
+E I+ ++++++ ++ ++ P+P TKV +MPM ++ E + TR +
Sbjct: 195 NEPIVPEVMKEIKEIETWILMLLSSPVPVPGKTKVQIEVMPMDLSQVFEFALPDHTRFTL 254
Query: 276 LMRPLH 293
+ PLH
Sbjct: 255 IDFPLH 260
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 396 IISQRSQCLS-NLGLVEPKVPDGSPQAPDPEPQP 298
I + S+C+ G P+ PDG+P AP P QP
Sbjct: 125 IAASTSECIPCPAGAPGPQGPDGAPGAPGPSGQP 158
>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical protein
T06D8.10 protein.
Length = 1490
Score = 27.9 bits (59), Expect = 4.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 413 CRLNRLEQVFSTSCELTPCITCACEI 490
C +N S +TPC+TC C +
Sbjct: 1423 CEMNGKIIALGDSVHMTPCVTCTCTL 1448
>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical protein
T06D8.10 protein.
Length = 1490
Score = 27.9 bits (59), Expect = 4.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 413 CRLNRLEQVFSTSCELTPCITCACEI 490
C +N S +TPC+TC C +
Sbjct: 1423 CEMNGKIIALGDSVHMTPCVTCTCTL 1448
>AF039720-3|AAB96697.1| 281|Caenorhabditis elegans Collagen protein
54 protein.
Length = 281
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 348 PKVPDGSPQAPDPEPQP 298
P+ PDG+P AP P+ QP
Sbjct: 139 PQGPDGAPGAPGPDGQP 155
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 360 GLVEPKVPDGSPQAPDPEPQP 298
G P PDG+P AP P+ QP
Sbjct: 142 GEAGPAGPDGAPGAPGPDGQP 162
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 324 GGSHQAPSVPPIPNYSG 374
GG ++AP PP P+Y+G
Sbjct: 48 GGGYEAPPPPPPPSYAG 64
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 360 GLVEPKVPDGSPQAPDPEPQP 298
G P PDG P AP P+ QP
Sbjct: 204 GPAGPPGPDGQPGAPGPDGQP 224
>Z81117-2|CAB03314.2| 343|Caenorhabditis elegans Hypothetical
protein T06E6.4 protein.
Length = 343
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 244 LSISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLSV 116
L IS C GI + V ++ + + QT Q H L+SL +
Sbjct: 203 LMISTCYGIWLGVHTMVILQRLRGHMSVQTYQMHLTALISLGL 245
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,489,478
Number of Sequences: 27780
Number of extensions: 205575
Number of successful extensions: 864
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -