Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F16
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07360.1 68415.m00843 SH3 domain-containing protein contains ...    30   0.96 
At5g04090.2 68418.m00393 expressed protein                             28   3.9  
At5g04090.1 68418.m00394 expressed protein                             28   3.9  
At4g34150.1 68417.m04846 C2 domain-containing protein similar to...    28   3.9  

>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
           Pfam profile PF00018: SH3 domain
          Length = 1196

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 195 KVGRTLMPMPRHKLMERTVQMLTRTQMLMRPLHHAAGALDQELGGSHQA 341
           K  +T  P P  KL+ R ++   R+    RP+ HAA  + QE+G S  A
Sbjct: 454 KSNKTKRPQPLIKLVMRRLESSFRS--FSRPVLHAAARVVQEMGKSRAA 500


>At5g04090.2 68418.m00393 expressed protein
          Length = 264

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 219 MPRHKLMERTVQMLTRTQMLMRPLHHAAGALDQELGGSHQAP 344
           M +H++ME   ++L +    MR +H  AGA  +   GSH  P
Sbjct: 31  MVKHQIMEYN-ELLEQQINHMRQMHPTAGASVRNRNGSHVPP 71


>At5g04090.1 68418.m00394 expressed protein
          Length = 305

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 219 MPRHKLMERTVQMLTRTQMLMRPLHHAAGALDQELGGSHQAP 344
           M +H++ME   ++L +    MR +H  AGA  +   GSH  P
Sbjct: 72  MVKHQIMEYN-ELLEQQINHMRQMHPTAGASVRNRNGSHVPP 112


>At4g34150.1 68417.m04846 C2 domain-containing protein similar to
           calcium-dependent protein kinase [Dunaliella
           tertiolecta] GI:6644464; contains Pfam profile PF00168:
           C2 domain
          Length = 247

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 234 LMERTVQMLTRTQMLMRPLHHAAGALDQELGGSHQAPSVPPIPNYSGIENA 386
           L  +T +     Q+L+    H AGA     G +  AP  P +P YS   +A
Sbjct: 111 LQSKTGRFAGEVQLLL----HYAGAKKHNYGSAPSAPYAPHVPQYSAPPSA 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,874,308
Number of Sequences: 28952
Number of extensions: 192178
Number of successful extensions: 641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)