Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F15
         (402 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   1.1  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   1.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.0  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 243 ENSLVKICFSSIIVNVLCSFFL 178
           + S+V +CFS +   + C FFL
Sbjct: 218 DGSIVFVCFSLVEDTLPCVFFL 239


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 299 PFGLWYSSKSKYEKLAKPKK 240
           PFGL     S Y+++ KPKK
Sbjct: 281 PFGLPEYEYSFYQEVKKPKK 300


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 225 ICFSSIIVNVLCSFFLYVRVV*YLC 151
           I F+  ++ +LC ++ Y  ++  LC
Sbjct: 273 IIFTMHLLFLLCIYYFYCALIILLC 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,981
Number of Sequences: 336
Number of extensions: 1147
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)