Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F15
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    28   0.47 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   2.5  
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa...    25   4.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   5.8  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    24   7.7  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    24   7.7  
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    24   7.7  

>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 28.3 bits (60), Expect = 0.47
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 327 SHDSPISSYPFRTMVLIE 274
           +H  P+S YP+RT++LI+
Sbjct: 179 AHSVPLSQYPYRTVILIK 196


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -2

Query: 227 RFVLVQSLLMFYVVFFYMC 171
           RF+L+ S+L+F+++  + C
Sbjct: 191 RFILLDSMLLFFIISTFFC 209


>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 164 CDIYVPEPETIPERLFYVIPSSYK 93
           C IY   PE   E L+Y+  S YK
Sbjct: 67  CSIYKDSPERRLECLYYIALSHYK 90


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 212  QSLLMFYVVFFYMCELCDIYVPEPETIPERLFYVIPSSYKNY 87
            Q  +++YV  FY+ E+C   +   + + +    V+P    NY
Sbjct: 1725 QDNILYYVKLFYLSEICKTIISMIKVVADS--SVVPDLTINY 1764


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 257 LAKPKKTH*LRFVLVQSLLMFYVVFFYMCELCDIYV 150
           LAKP+K   L   +  +L+ F  +F Y+     +Y+
Sbjct: 168 LAKPEKNMLLSAAIFSALICFKHIFLYVAPAYFVYL 203


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 312 WESHDCKCCPIEDVR*EFTVVVFKSNNG 395
           WE+HD  C  I+D R    VVV ++ +G
Sbjct: 99  WEAHDTLCQQIQDNR--VIVVVGETGSG 124


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 179 YMCELCDIYVPEPETI 132
           + CE+C IY+P  + I
Sbjct: 71  FACEVCQIYIPNSKKI 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,883
Number of Sequences: 5004
Number of extensions: 20782
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)