Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F15
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    29   1.8  
04_01_0596 - 7852529-7855185,7855545-7855581                           27   4.2  
01_07_0330 - 42788802-42788891,42789224-42789274,42789365-427893...    27   4.2  
03_06_0370 + 33431696-33432217,33432521-33432796,33433003-334331...    27   7.3  

>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = -2

Query: 401  EGAIVAF--KDYD---RKFSSHILDWAAFAVMTLPSLAIPFGLWYSSKSKYEK 258
            E A+V F  KD D   R   + +L+W + +V    + ++ FGLWY +KS +++
Sbjct: 3176 EQAVVVFTGKDGDVLKRFVDTFLLEWNSTSVRH-EAKSVLFGLWYHAKSSFKE 3227


>04_01_0596 - 7852529-7855185,7855545-7855581
          Length = 897

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 356 SHILDWAAFAVMTLPSLAIPFGLWYSSKSK 267
           SH+L W    ++ LP    P G W+ S ++
Sbjct: 5   SHMLRWIISMLLNLPKAVKPIGEWFLSGAR 34


>01_07_0330 -
           42788802-42788891,42789224-42789274,42789365-42789397,
           42789501-42789614,42789757-42789849,42789934-42790029,
           42790255-42790359,42790453-42790768,42790955-42791010,
           42791131-42791399,42791616-42791658
          Length = 421

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 348 PRLGSICSHDSPISSYPFRTMVLIEE 271
           PR GS   HD+ I  YPF     +EE
Sbjct: 148 PRTGSKLDHDTMIEQYPFDMSKQLEE 173


>03_06_0370 +
           33431696-33432217,33432521-33432796,33433003-33433183,
           33433253-33433455,33433545-33433732,33433844-33434105
          Length = 543

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 401 EGAIVAFKDYDRKFSSHILDWAAFAVMTLPS 309
           +  I+ F+++ RK+  H + WA   V  LP+
Sbjct: 417 DNMIITFRNWFRKYCKHQVGWATPMVNQLPT 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,377,228
Number of Sequences: 37544
Number of extensions: 109832
Number of successful extensions: 334
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)