Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F15
         (402 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25554| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  

>SB_25554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 36

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/36 (50%), Positives = 27/36 (75%)
 Frame = -2

Query: 347 LDWAAFAVMTLPSLAIPFGLWYSSKSKYEKLAKPKK 240
           +DW  F++M++P++ IPF +WY S SKYE + K KK
Sbjct: 1   VDWGLFSLMSIPTMLIPFMVWYRSHSKYENI-KAKK 35


>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = -2

Query: 341 WAAFAVMTLPSLAIPFGLWYSSKSKYEKLAKPKKTH*LRFVLVQSLLMFYVVFFY 177
           +A   V ++P+L I + +W S    +    + K  H   F ++   L+F    F+
Sbjct: 359 FALLFVCSIPNLVIEYDIWESDSIMFSLFYRFKSVHVDNFHVISQELVFDAFLFF 413


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,978,203
Number of Sequences: 59808
Number of extensions: 140940
Number of successful extensions: 267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)