Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F15
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical pr...    33   0.077
AF039046-10|AAB94220.2|  233|Caenorhabditis elegans Serpentine r...    28   2.9  
AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine re...    28   2.9  
Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical ...    27   6.7  
U80028-6|AAQ01536.1|  365|Caenorhabditis elegans Serpentine rece...    26   8.8  
AF067950-6|AAG24156.2|  372|Caenorhabditis elegans Serpentine re...    26   8.8  

>U41274-1|AAA82458.1|  188|Caenorhabditis elegans Hypothetical
           protein T04G9.5 protein.
          Length = 188

 Score = 33.1 bits (72), Expect = 0.077
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -2

Query: 401 EGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWYSSKSKYEKLAKPKKT 237
           EG I   ++YDR+F+     +  F ++  P+    F L+  SK+++  + K K T
Sbjct: 134 EGYIYRQREYDRRFAPKYTYFLVFFLIVAPTTLGSFLLFQQSKARFPNVIKKKST 188


>AF039046-10|AAB94220.2|  233|Caenorhabditis elegans Serpentine
           receptor, class j protein23, isoform a protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 206 LLMFYVVFFYMCELCDIYVP 147
           LL+++ +F   C LCD+ VP
Sbjct: 43  LLLYFAIFNMACSLCDMLVP 62


>AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine
           receptor, class j protein23, isoform b protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 206 LLMFYVVFFYMCELCDIYVP 147
           LL+++ +F   C LCD+ VP
Sbjct: 43  LLLYFAIFNMACSLCDMLVP 62


>Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical
           protein F28H7.11 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 206 LLMFYVVFFYMCELCDIYVP 147
           LL ++ +F   C LCD +VP
Sbjct: 43  LLFYFSIFNMSCSLCDTFVP 62


>AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical
           protein Y45F10A.2 protein.
          Length = 502

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 176 MCELCDIYVPEPETIPERLFYVIPSSYKNYVLLQ 75
           M E+ + Y+P P+T  + L  ++   Y NYV+ Q
Sbjct: 412 MNEIFEGYIPHPDTNRDALDILLFHQYGNYVVQQ 445


>U80028-6|AAQ01536.1|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein123 protein.
          Length = 365

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 392 IVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWYSSKSKYEKLAKPK 243
           +   KDY R+ S+    W  F +  + +L I   L     SKYE L KPK
Sbjct: 118 LTVVKDYSRRCST----WLIFFIAFIRTLIIQNPL----SSKYEALGKPK 159


>AF067950-6|AAG24156.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein122 protein.
          Length = 372

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 392 IVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWYSSKSKYEKLAKPK 243
           +   KDY R+ S+    W  F +  + +L I   L     SKYE L KPK
Sbjct: 118 LTVVKDYSRRCST----WLIFFIAFIRTLIIQNPL----SSKYEALGKPK 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,870,894
Number of Sequences: 27780
Number of extensions: 112320
Number of successful extensions: 263
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)