Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F14
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    29   0.31 
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    28   0.54 
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   2.9  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    25   3.8  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.7  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    24   6.7  

>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 196 YGCWYRLNTDRDFRFYMYKNHNWILESYYAL-GEKI 300
           YG W  + T  DF  Y      WI+E+ Y + GE++
Sbjct: 280 YGGWDGVKTFSDFWIYNVDKDLWIMENEYGIPGERV 315


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.9 bits (59), Expect = 0.54
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +1

Query: 133 KFVGFSLKTVFIVEAAAFAVSYGCWYRLNTDRDFRFYMYKNHNWILESYYALGEKI 300
           +F G+S   V  +E A  + S  C++ +   R  +    KN NW + S   +  K+
Sbjct: 98  EFFGYSFDRVGCMELAFISFSAACYFNI---RSIKSLSLKNKNWTIISIIEIPIKL 150


>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +1

Query: 235 RFYMYKNHNWILES----YYALGEKIADQKTRQLDQA 333
           + +++ +  W+L++    Y  L EK  D+K  QLD A
Sbjct: 106 KLWLWSSRFWLLDTLLTIYQLLREKTEDEKEHQLDLA 142


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 76  GNI*FYSIMLTKTPKSGFRKFVGFSLKTVFIVE 174
           G++  YS  + +    GF  FV FSL T+ + E
Sbjct: 137 GSLDIYSYDIREIVHKGFPGFVDFSLPTIVLSE 169


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 78  EYLILFYYAHKNPQVWIP 131
           ++LI FYY  K P  WIP
Sbjct: 52  DFLIWFYY-QKTPLKWIP 68


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 366 NELYLSFTSPECLIKL 319
           N++YL F+ P CL+++
Sbjct: 241 NQIYLYFSYPSCLVRV 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,124
Number of Sequences: 5004
Number of extensions: 31018
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)