Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F14
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0177 + 32163393-32163443,32163711-32163803,32163875-321640...    28   2.0  
06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724     28   2.7  

>03_06_0177 +
           32163393-32163443,32163711-32163803,32163875-32164071,
           32164157-32164262,32164391-32164537,32164637-32164756
          Length = 237

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 114 PQVWIPKICWLFTKN 158
           P +W+P +CWL  K+
Sbjct: 59  PTIWLPVVCWLLVKS 73


>06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724
          Length = 353

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 203 QP*DTAKAAASTMNTVFSEKPTNFRNPDLGVFVSII 96
           +P   A AAA+  +T   +  ++ R PDLGV +S++
Sbjct: 81  EPVAAAAAAATVASTSVFDNESHTRTPDLGVGLSLV 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,406,891
Number of Sequences: 37544
Number of extensions: 177074
Number of successful extensions: 313
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)