Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F14
         (372 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6538| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_55290| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  

>SB_6538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 927

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 283 HSNFLGSNYDFCTYKSGNHDRC*VCTNNRKILQRPP 176
           +S+    NY  C Y S +  +   C +  ++L++PP
Sbjct: 444 YSSVPNVNYSLCVYTSDSVTQVPTCPSTVEVLRKPP 479


>SB_55290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +2

Query: 68  RILGISDFILLCSQKPPSLDSENLLAFH*KLCS*LKRRPLQYLTVV 205
           R LG+S    +C+ +P  L+   +L+F  +LCS     P+Q++ ++
Sbjct: 112 RSLGLSSSFQICAFRPGYLERRGILSF--RLCS-----PIQHVAIL 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,134,558
Number of Sequences: 59808
Number of extensions: 206879
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)