Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F14
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine re...    28   1.9  
U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine re...    27   5.7  
AC006670-3|ABC71823.1|  350|Caenorhabditis elegans Patched relat...    26   7.5  
AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched relat...    26   7.5  
U97015-5|AAB52344.2|  362|Caenorhabditis elegans Hypothetical pr...    26   9.9  
AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical ...    26   9.9  

>AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein195 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 133 KFVGFSLKTVFIVEAAAFAVSYGC--WYRLNTDRDFRFYMYKNHNWILESYYAL 288
           +F+  +  T  ++E     + + C  W      +  ++YM+  H WIL   Y+L
Sbjct: 14  EFLTLAFHTTSLIETPIHCLGFYCILWKTPEQMKSVKWYMFTLHTWILLFDYSL 67


>U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical
           protein SSSD1.1 protein.
          Length = 636

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 90  LFYYAHKNPQVWIPKICWLFTKNCVHS*SGGLCSILR 200
           +F++ H N Q       WLF K  + + S GL S +R
Sbjct: 141 VFWHCHANAQATAISYSWLFEKKPIKTTSLGLRSNIR 177


>AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine
           receptor, class t protein6 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 139 VGFSLKTVFIVEAAAFAVSYGCWY 210
           VG+S  ++   +   F+V Y CW+
Sbjct: 160 VGYSFWSLLFTKPVLFSVEYSCWF 183


>AC006670-3|ABC71823.1|  350|Caenorhabditis elegans Patched related
           family protein12, isoform b protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 185 LQYLTVVGTDLTPIVISAFI 244
           L  L++ GTDL PIV+SA I
Sbjct: 221 LGILSLTGTDLDPIVMSALI 240


>AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched related
           family protein12, isoform a protein.
          Length = 901

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 185 LQYLTVVGTDLTPIVISAFI 244
           L  L++ GTDL PIV+SA I
Sbjct: 772 LGILSLTGTDLDPIVMSALI 791


>U97015-5|AAB52344.2|  362|Caenorhabditis elegans Hypothetical
           protein F48C1.2 protein.
          Length = 362

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 247 TYKSGNHDRC*VCTNNRKILQRPPLQL*TQFLVKSQQI--FGIQT 119
           T KSGNH++C V   NR       + L   F++K+  I  F I+T
Sbjct: 87  TIKSGNHEQCVVHMRNRLRFNETIVPL-LVFILKNATINDFSIET 130


>AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical
           protein M01D7.1 protein.
          Length = 339

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 194 DTAKAAASTMNTVFSEKPTNFRNPDLGVFVSIIE*NQIFPIFVQNKNN 51
           +T K   + +   F +KP N  N       ++I    I+ ++VQ KN+
Sbjct: 2   ETLKFLFTYLRVTFLDKPFNLLNLPFVALKNVIYQMDIYSVYVQCKNS 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,541,286
Number of Sequences: 27780
Number of extensions: 170265
Number of successful extensions: 392
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)