Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F14
         (372 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04790.1 68416.m00516 ribose 5-phosphate isomerase-related si...    27   3.0  
At1g11020.1 68414.m01264 zinc finger (C3HC4-type RING finger) fa...    27   3.0  
At2g34770.1 68415.m04269 fatty acid hydroxylase (FAH1) identical...    26   7.0  
At1g65920.1 68414.m07480 regulator of chromosome condensation (R...    26   9.2  

>At3g04790.1 68416.m00516 ribose 5-phosphate isomerase-related
           similar to ribose-5-phosphate isomerase GI:18654317 from
           [Spinacia oleracea]
          Length = 276

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 196 YGCWYRLNTDRDFRFYMYKNHNWILESYY 282
           +GC  +L  D D + Y+  N N+I++ Y+
Sbjct: 202 FGCESKLRVDGDGKPYVTDNSNYIIDLYF 230


>At1g11020.1 68414.m01264 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 321

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 118 KSGFRKFVGFSLKTVFIVEAAAFAVSYGCWYRLNTDRDFR 237
           K+ FR FV   +  VF+      AV  G  Y ++ D +FR
Sbjct: 134 KAKFRLFVARDVLLVFLAVQTVIAVMAGFAYMMDKDGEFR 173


>At2g34770.1 68415.m04269 fatty acid hydroxylase (FAH1) identical to
           fatty acid hydroxylase Fah1p GB:AF021804 GI:2736147 from
           [Arabidopsis thaliana]
          Length = 237

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 69  EYWEYLILFYYAHKNPQVWIPKICWLFTKN 158
           ++WE+L L  +    P +W+P + W  +++
Sbjct: 45  DFWEFLTLTVW-WAVPVIWLPVVVWCISRS 73


>At1g65920.1 68414.m07480 regulator of chromosome condensation
           (RCC1) family protein / zinc finger protein-related
           contains Pfam profiles: regulator of chromosome
           condensation (RCC1), PF01363 FYVE zinc finger
          Length = 1006

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 280 SNFLGSNYDFCTYKSGNHDRC*VCT-NNRKILQRPPLQL*TQFLVKSQQIFGIQTWG 113
           S++  ++YDF            +C  ++++    PPL + TQ + +S  +  I  WG
Sbjct: 209 SSYYETDYDFRNSDCDRSTGSELCRFSSQRFAASPPLSIITQPVTRSNVLKDIMIWG 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,920,181
Number of Sequences: 28952
Number of extensions: 153398
Number of successful extensions: 300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)