Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F13
         (429 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    26   0.17 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.23 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.23 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.23 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.23 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   0.70 
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   5.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   5.0  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.8 bits (54), Expect = 0.17
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 321 IVTNWDDMEKIWHHTFYNELRVAPEEQPVLLT 416
           +VT+W + E+I++     +L V    +PV+LT
Sbjct: 158 VVTDWVNFERIYYKLTKKKLSVFFGNKPVILT 189


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 359 MPDLLHIVPVGDDAVFD 309
           +PD+  I+P GDD   D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 359 MPDLLHIVPVGDDAVFD 309
           +PD+  I+P GDD   D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 359 MPDLLHIVPVGDDAVFD 309
           +PD+  I+P GDD   D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 359 MPDLLHIVPVGDDAVFD 309
           +PD+  I+P GDD   D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 218 VTRSPHDRGKYGAGSVVSRETGFAHSGPIVYDQRGNFLVAHCEL 87
           +T S  DR KYG  + ++ E GF     + Y+ R +    HC +
Sbjct: 60  ITTSDRDRSKYGMLARLAVEAGFDW---VYYESRAHI---HCSV 97


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 142 ECAKPVSRETTLPAP 186
           +CAKP+++   +P P
Sbjct: 272 DCAKPLTQIRNIPGP 286


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 142 ECAKPVSRETTLPAP 186
           +CAKP+++   +P P
Sbjct: 272 DCAKPLTQIRNIPGP 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,744
Number of Sequences: 336
Number of extensions: 2002
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)