Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F13
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   2.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   4.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 284  GYPHTQIPHRTRHRHQLGRYGEDLASHLLQ*AACSSRGAASLAHRSSP 427
            GY H    H T HR Q+    + +   +    +C+S G  ++  +S P
Sbjct: 1678 GYHHNVNKHCTIHRTQVKETDDKICFTMRPVVSCAS-GCTAVETKSKP 1724


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 380 QLIVEGVMPDLLHIV 336
           Q +V+ V PD+LH++
Sbjct: 23  QTVVDKVPPDMLHLI 37


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 209 TSSPGRHGRHGSEGL 253
           T+  G HG HG  GL
Sbjct: 129 TNQTGLHGLHGLHGL 143


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 141 GMCKAGFAGD 170
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,928
Number of Sequences: 438
Number of extensions: 2521
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)