Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F10
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    27   1.0  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    27   1.3  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    26   3.1  
SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomy...    25   5.4  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   7.1  
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   9.4  
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    24   9.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   9.4  

>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 60  SKIYSAKNIEKLSFKINIMSKSEVLYMKGMNTSESDGDCEDIWDDKKLN--DAYDKALRI 233
           +K+     ++   F +N+M + ++L + G+N     G  + I +   L   DA  +    
Sbjct: 73  NKLQKGAFVQLTQFTVNVMKERKILIVLGLNVLTELGVMDKIGNPAGLETVDALRQQQNE 132

Query: 234 ANVEVAKRVAMSTNT 278
            N   A R  +ST+T
Sbjct: 133 QNNASAPRTGISTST 147


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -1

Query: 210 HHSVFYHPKYLHSLHQ---IQKCSCLSCKVLHS 121
           +HS   HPK++HSL +     +  CL+C+ + S
Sbjct: 220 NHSDVMHPKWVHSLFEGTLTSETKCLTCENITS 252


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 438 H*WFLVKKPHIPIHRPHK*LCMAFRS 361
           H W+L+ + +   HRP+  L  AF+S
Sbjct: 730 HLWYLLYQAYSSAHRPYNSLLCAFQS 755


>SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 165 DGDCEDIWDDKKLNDAYDKAL 227
           D   +++WDD +L +A++ AL
Sbjct: 2   DQSQKEVWDDSELRNAFETAL 22


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 36  SRY*NKNLSKIYSAKNIEK--LSFKINIMSKSEVLYMKGMNTSESDGDCEDIWDDKKLND 209
           S Y  +N  K +S+K  +   LS    + SKS   Y    ++     + +D+    ++ D
Sbjct: 564 SAYWTRN-GKTFSSKAFDSILLSRLRYVRSKSPTPYYPIESSEFGFTNLKDVTSKDEITD 622

Query: 210 AYDKALR 230
            +DKALR
Sbjct: 623 GFDKALR 629


>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 51  KNLSKIYSAKNIEKLSFKINIMSKS 125
           KN  K  +A  I KLS K+NIM  S
Sbjct: 32  KNAGKAINAHLIPKLSPKMNIMRSS 56


>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +3

Query: 84  IEKLSFKINIMSKSEVLYMKGMNTSESDGDCEDIWDDKKLNDAYDKALRIANVEVAKRVA 263
           I  LS K+N++   E +  + ++ S  DG+ E+  +D    D  +    I  V+ A+   
Sbjct: 106 IFSLSGKLNMVLSQEEMRQRRLDFSSEDGE-EEEENDYIDEDVDEAGYDIEVVDEAENDD 164

Query: 264 MSTNTERNKE 293
           M  + E N +
Sbjct: 165 MDNDLEANAD 174


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 170  SIRFRSVHAFHVKYFTLRHYINFKR*FFYIFG 75
            SI +   H     YF+  H+I F   F  IFG
Sbjct: 3071 SIVWEFKHLGKTSYFSCLHFIRFLNTFCLIFG 3102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,512,867
Number of Sequences: 5004
Number of extensions: 25454
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)