Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F10
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 28 3.0
06_03_1332 - 29403320-29407804 28 3.0
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 28 3.0
11_06_0710 - 26492093-26493460 28 4.0
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052... 27 5.3
05_03_0394 - 13440871-13441098,13441197-13441394,13441491-134415... 27 9.2
03_04_0054 + 16883678-16883719,16884667-16884723,16884852-168849... 27 9.2
03_02_0529 + 9218734-9218793,9218898-9220050,9220133-9220192,922... 27 9.2
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619... 27 9.2
02_01_0063 - 451471-451725,451825-451913,452028-452133,452214-45... 27 9.2
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 28.3 bits (60), Expect = 3.0
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Frame = +3
Query: 12 KEKIALFCSRY*NKNLSKIYSAKNIEKLSFKINIMSKSEVLYMKGMNTSESDGDCEDIWD 191
K KIA CSR + +K++ + ++S + YMKG+ SD DIW+
Sbjct: 775 KNKIAEQCSRVEDLR-NKMFQGTSTTRVS--------ARQAYMKGIVDQSSDTQYWDIWN 825
Query: 192 DKKLNDAYD-------KALRIANVEVAKRVAMSTNTERNKEGDT 302
+KL+ ++ KA + ++ + N E NK G+T
Sbjct: 826 RQKLSPEFEAKRQNILKANQNLTNQLVELERHFNNLEMNKFGET 869
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 351 VEWKTGMPCRAIYEGDGLEYE 413
+ W+ G PCRA+ EG GL+++
Sbjct: 1027 IPWR-GSPCRALIEGVGLDFQ 1046
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 180 DIWDDKKLNDAYDKALRIANVEVAKRVAMSTNTERNKEGD 299
++WDD L DA+D A+ +K +T +E + GD
Sbjct: 6 ELWDDSALVDAFDHAVATFKAMHSKN-TQATTSENEEPGD 44
>11_06_0710 - 26492093-26493460
Length = 455
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 153 TSESDGDCEDIWDDKKLN-DAYDKALRIANVEVAKRVAMSTNTE 281
+ ++ GDC ++DD K N D+ D AL+ + + A + S T+
Sbjct: 371 SKDAMGDCLQMYDDMKSNLDSADAALKKGDKDTAHTMLDSARTD 414
>07_03_1731 -
29102403-29102720,29103529-29103735,29103937-29105210,
29105298-29105734,29106370-29106764,29106921-29107051,
29109034-29109052
Length = 926
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 289 KKEIPRIKKE-SLQNRRLRRKMSNGRPECHAELFMRAMDWNMRL 417
K++ +KKE ++ RRL ++ + E+ R+ DW++RL
Sbjct: 403 KEQCKNLKKELDIRTRRLEKEKMEVQTTLEKEMDRRSDDWSIRL 446
>05_03_0394 -
13440871-13441098,13441197-13441394,13441491-13441594,
13441687-13442551,13442677-13443045,13443372-13443533,
13443838-13444056,13444138-13444656,13444742-13444819,
13446041-13446163
Length = 954
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 289 KKEIPRIKKESLQNRRLRRKMSNGRPECH 375
KK PR++K+ + +RLR M++ RP +
Sbjct: 132 KKSQPRVQKKRKRRKRLRFGMTHRRPSAN 160
>03_04_0054 +
16883678-16883719,16884667-16884723,16884852-16884959,
16885028-16885102,16885744-16885833,16885950-16886057,
16886137-16886211,16886371-16886433,16886531-16886924,
16888539-16888651,16888799-16888829,16888987-16889864
Length = 677
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +3
Query: 144 GMNTSES----DGDCEDIWDDKKLNDAYDKALRIANVEVAKRVAMSTNTERNKEG 296
G++T+E+ DG ED +K+ N A + +VEVA+ + S E +++G
Sbjct: 446 GIDTAEALQVKDGKSEDAAKNKRDNSAENGPKGGVSVEVAENINRSAAAESSQDG 500
>03_02_0529 +
9218734-9218793,9218898-9220050,9220133-9220192,
9220284-9220363,9220486-9220730,9220815-9221138,
9221211-9221274,9221968-9222144
Length = 720
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 295 EIPRIKKESLQNRRLRRKMSNGRPECHAEL 384
E+PR+ K + R +R+K S G+ C +L
Sbjct: 11 EMPRVPKSARGKRSIRKKESQGQVMCAFDL 40
>02_02_0028 +
6196453-6196512,6196936-6197320,6197843-6197925,
6198060-6198183,6198404-6198523,6198595-6198755,
6198999-6199157,6199272-6199434,6199604-6199729,
6199775-6199900,6200400-6200764,6201204-6201404,
6201685-6201794,6201919-6202003,6202553-6202681,
6202763-6202868,6202984-6203072,6203172-6203474
Length = 964
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 15 EKIALFCSRY*NKNLSKIYSAKNIEKLSFKINIMSKSEVLYMKGMNTSESDGDCEDIWDD 194
+ + LF +K +SK YS +LS I+++ +V+YM ++ +D+W+
Sbjct: 763 KSVRLFAGGIADKLVSK-YSGGMKRRLSVAISLIGDPKVVYMDEPSSGLDPASRKDLWNA 821
Query: 195 KK 200
K
Sbjct: 822 VK 823
>02_01_0063 -
451471-451725,451825-451913,452028-452133,452214-452342,
452886-452970,453514-453545
Length = 231
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 15 EKIALFCSRY*NKNLSKIYSAKNIEKLSFKINIMSKSEVLYMKGMNTSESDGDCEDIWDD 194
+ + LF +K +SK YS +LS I+++ +V+YM ++ +D+W+
Sbjct: 46 KNVRLFAGGIADKLVSK-YSGGMKRRLSVAISLIGDPKVVYMDEPSSGLDPASRKDLWNA 104
Query: 195 KK 200
K
Sbjct: 105 VK 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,070,332
Number of Sequences: 37544
Number of extensions: 142570
Number of successful extensions: 375
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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