Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F10
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11900| Best HMM Match : SMN (HMM E-Value=6.3e-10)                   35   0.027
SB_10669| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_12315| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_54664| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)                     28   3.1  
SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_50518| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-32)                 27   5.4  
SB_5412| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.4  
SB_44597| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_26833| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_11900| Best HMM Match : SMN (HMM E-Value=6.3e-10)
          Length = 240

 Score = 35.1 bits (77), Expect = 0.027
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +3

Query: 120 KSEVLYMKGMNTSESDGDCEDIWDDKKLNDAYDKALRI 233
           + EV+Y  G +TS SD     IWDD  L +AYD+A+ +
Sbjct: 6   EGEVIYKAGQSTSVSD-----IWDDSALIEAYDRAVNL 38


>SB_10669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 37

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +3

Query: 357 WKTGMPCRAIYEGDGLEYEA 416
           WK G  CRAI+  DGL YEA
Sbjct: 1   WKVGDSCRAIFSEDGLMYEA 20


>SB_12315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +3

Query: 141 KGMNTSESDGDCEDIWDDKKLNDAYDKALRIANVEVAKRVAMSTNTERNKEGDT 302
           K  NTS++DGD +D ++D +  D+  +       +V+K+   + N + +KE  +
Sbjct: 319 KDDNTSDNDGDDDDDYEDLEFTDSEAEESEWKPQKVSKQKQTTNNKQFSKESSS 372


>SB_54664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 268 QQTLKGIKKEIPRIKKESLQNRRLRRKMSNGRPECHAELFMRAMD 402
           +Q ++ +++EIP+   ES++ + L  ++   R +CH  L     D
Sbjct: 51  EQKIRQVQEEIPKCITESVKLKDLLEELKVAREKCHEILVKEEQD 95


>SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)
          Length = 1656

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 108 NIMSKSEVLYMKGMNTSESDGDCEDIWD---DKKL-NDAYDKALRIANVEVA 251
           N  S+  + Y   +   E+D DCED  D   D  L ND  DK    A+ E+A
Sbjct: 146 NAHSRVTISYQTHLKQHETDNDCEDATDINLDGPLSNDCEDKGFDGASDELA 197


>SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +3

Query: 51  KNLSKIYSAKNIEKLSFKINIMSKSEVLYMKGMNTSESDGDCEDIWDDKKLNDAYD 218
           K+LS++   K+ E  +F +   SKS+ +  K   T ESD D +D  +D K ++  D
Sbjct: 46  KDLSRLQK-KDPEFYTF-LQDKSKSKTIKKKKKKTEESDDDAKDSGNDLKDDNVED 99


>SB_50518| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-32)
          Length = 375

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 165 DGDCEDIWDDKKLNDAYDKAL 227
           DG C ++W  + LN AY  AL
Sbjct: 164 DGQCLELWPSQSLNKAYTLAL 184


>SB_5412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 159 ESDGDCEDIWDDKKLNDAYDKAL 227
           + D + ED++DD  + D YD ++
Sbjct: 69  DDDNNIEDVYDDSNIEDVYDDSV 91


>SB_44597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 159 ESDGDCEDIWDDKKLNDAYD 218
           + D + ED++DD  + D YD
Sbjct: 69  DDDNNIEDVYDDSNIEDVYD 88


>SB_26833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 51  KNLSKIYSAKNIEKLSFKINIMSKSEVLYMKGMNTSESDGDCE 179
           +N  +++ A   E+    +N+ S    + ++G+N +ESD D E
Sbjct: 543 QNYHRLFWASQ-ERYDKLVNLSSSGGAVGLRGVNAAESDADSE 584


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,881,180
Number of Sequences: 59808
Number of extensions: 178108
Number of successful extensions: 595
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)