Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F10
(450 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81048-7|CAC42273.1| 207|Caenorhabditis elegans Hypothetical pr... 32 0.22
AF156887-1|AAF00192.1| 207|Caenorhabditis elegans survival moto... 32 0.22
Z81048-6|CAB02838.1| 197|Caenorhabditis elegans Hypothetical pr... 30 0.68
Y17255-1|CAB41945.1| 197|Caenorhabditis elegans SMN protein pro... 30 0.68
U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine rece... 29 1.2
Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical p... 29 1.6
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 29 1.6
L11247-9|AAK84522.2| 639|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z68114-7|CAA92161.1| 317|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81142-9|CAB03501.2| 370|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z81491-17|CAO82030.1| 959|Caenorhabditis elegans Hypothetical p... 27 6.3
Z81092-2|CAB03145.3| 959|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical pr... 27 6.3
U67949-9|AAM69108.1| 486|Caenorhabditis elegans Hypothetical pr... 27 6.3
U67949-8|AAD32274.1| 626|Caenorhabditis elegans Hypothetical pr... 27 6.3
>Z81048-7|CAC42273.1| 207|Caenorhabditis elegans Hypothetical
protein C41G7.1b protein.
Length = 207
Score = 31.9 bits (69), Expect = 0.22
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +3
Query: 153 TSESDGDCEDIWDDKKLNDAYDKALRIANVEVAKRVAMSTNTERNKEGDTXXXXXXXXXX 332
+ D + +D+WDD +L YD++L+ E++K + T R +G+
Sbjct: 6 SKSGDMEVDDVWDDTELIKMYDESLQ----EISKNETSAKITSRKFKGEDGKMYT----- 56
Query: 333 XXXXXDVEWKTGMPCRAIYEGDG 401
WK G C A YE +G
Sbjct: 57 --------WKVGGKCMAPYEENG 71
>AF156887-1|AAF00192.1| 207|Caenorhabditis elegans survival motor
neuron protein protein.
Length = 207
Score = 31.9 bits (69), Expect = 0.22
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +3
Query: 153 TSESDGDCEDIWDDKKLNDAYDKALRIANVEVAKRVAMSTNTERNKEGDTXXXXXXXXXX 332
+ D + +D+WDD +L YD++L+ E++K + T R +G+
Sbjct: 6 SKSGDMEVDDVWDDTELIKMYDESLQ----EISKNETSAKITSRKFKGEDGKMYT----- 56
Query: 333 XXXXXDVEWKTGMPCRAIYEGDG 401
WK G C A YE +G
Sbjct: 57 --------WKVGGKCMAPYEENG 71
>Z81048-6|CAB02838.1| 197|Caenorhabditis elegans Hypothetical
protein C41G7.1a protein.
Length = 197
Score = 30.3 bits (65), Expect = 0.68
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +3
Query: 171 DCEDIWDDKKLNDAYDKALRIANVEVAKRVAMSTNTERNKEGDTXXXXXXXXXXXXXXXD 350
+ +D+WDD +L YD++L+ E++K + T R +G+
Sbjct: 2 EVDDVWDDTELIKMYDESLQ----EISKNETSAKITSRKFKGEDGKMYT----------- 46
Query: 351 VEWKTGMPCRAIYEGDG 401
WK G C A YE +G
Sbjct: 47 --WKVGGKCMAPYEENG 61
>Y17255-1|CAB41945.1| 197|Caenorhabditis elegans SMN protein
protein.
Length = 197
Score = 30.3 bits (65), Expect = 0.68
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +3
Query: 171 DCEDIWDDKKLNDAYDKALRIANVEVAKRVAMSTNTERNKEGDTXXXXXXXXXXXXXXXD 350
+ +D+WDD +L YD++L+ E++K + T R +G+
Sbjct: 2 EVDDVWDDTELIKMYDESLQ----EISKNETSAKITSRKFKGEDGKMYT----------- 46
Query: 351 VEWKTGMPCRAIYEGDG 401
WK G C A YE +G
Sbjct: 47 --WKVGGKCMAPYEENG 61
>U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 11 protein.
Length = 350
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 140 HVKYFT-LRHYINFKR*FFYIFGTINFT*IFVLVPTAKQCNFFF 12
H +YF L++Y+ + F YI TI F+ F ++ AKQ +F F
Sbjct: 15 HTEYFPYLKNYL-YLEFFLYIIDTIQFSFFFWVMLCAKQFHFNF 57
>Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical
protein C25A1.10b protein.
Length = 696
Score = 29.1 bits (62), Expect = 1.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 141 KGMNTSESDGDCEDIWDDKKLNDAYDKALRIANV---EVAKRVAMSTNTERNKE 293
K +TS+SD D ED D K K +ANV VAK+ A S++ + E
Sbjct: 175 KKQDTSDSDSDSEDSDDGKSKKANPVKVTPVANVLQKVVAKKAASSSSDSSDDE 228
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 29.1 bits (62), Expect = 1.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 141 KGMNTSESDGDCEDIWDDKKLNDAYDKALRIANV---EVAKRVAMSTNTERNKE 293
K +TS+SD D ED D K K +ANV VAK+ A S++ + E
Sbjct: 175 KKQDTSDSDSDSEDSDDGKSKKANPVKVTPVANVLQKVVAKKAASSSSDSSDDE 228
>L11247-9|AAK84522.2| 639|Caenorhabditis elegans Hypothetical
protein F09G8.8 protein.
Length = 639
Score = 29.1 bits (62), Expect = 1.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 105 INIMSKSEVLYMKGMNTSESDGDCEDIWDDKKLNDAYDKA----LRIANVEVAKRVAMST 272
I K+EV++ T+E D ED+W D +L D +K+ L + + AK A
Sbjct: 334 IKYSDKAEVVFKPSDYTNE-DEFTEDLWSDPRLEDVDEKSDEVNLHLGLQQAAKMTASMR 392
Query: 273 NTER 284
N R
Sbjct: 393 NGVR 396
>Z68114-7|CAA92161.1| 317|Caenorhabditis elegans Hypothetical
protein F17A2.10 protein.
Length = 317
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 201 VFYHPKYLHSLHQIQKCSCLSCKVLHSSTL 112
+F+ PK+L +L +I C+C SC++ TL
Sbjct: 29 IFHSPKHLKTLKRIFLCNC-SCQIFSMITL 57
>Z81142-9|CAB03501.2| 370|Caenorhabditis elegans Hypothetical
protein ZK1037.1 protein.
Length = 370
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 78 KNIEKL--SFKINIMSKSEVLYMKGMNTSESDGDCEDIWDDKKLND 209
+N++ L S ++ + +++ + T E GD E +W+D K+ND
Sbjct: 97 QNVKHLVGSLHVSFTEYESLKFLESLETLEC-GDREFLWEDNKMND 141
>Z81491-17|CAO82030.1| 959|Caenorhabditis elegans Hypothetical
protein F58D12.3 protein.
Length = 959
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 108 NIMSKSEVLYMKGMNTSESDGDCEDIWDD 194
NI S VL +G+N+S+ D D E+ DD
Sbjct: 319 NIYSGKLVLSKEGVNSSDEDSDDEEYDDD 347
>Z81092-2|CAB03145.3| 959|Caenorhabditis elegans Hypothetical
protein F58D12.3 protein.
Length = 959
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 108 NIMSKSEVLYMKGMNTSESDGDCEDIWDD 194
NI S VL +G+N+S+ D D E+ DD
Sbjct: 319 NIYSGKLVLSKEGVNSSDEDSDDEEYDDD 347
>Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical
protein C25G4.7 protein.
Length = 349
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 174 CEDIWDDKKLNDAYDKALRI 233
C DI +K+LND Y K+L +
Sbjct: 314 CRDIQQNKRLNDRYVKSLNV 333
>U67949-9|AAM69108.1| 486|Caenorhabditis elegans Hypothetical
protein F55A4.8b protein.
Length = 486
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 93 LSFKINIMSKSEVLYMKGMNTSESDGDCEDIWDDKK 200
LS KIN S +E L +K SESD D E D++
Sbjct: 28 LSAKINYESTAERLSIKESEGSESDSDEESAISDEE 63
>U67949-8|AAD32274.1| 626|Caenorhabditis elegans Hypothetical
protein F55A4.8a protein.
Length = 626
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 93 LSFKINIMSKSEVLYMKGMNTSESDGDCEDIWDDKK 200
LS KIN S +E L +K SESD D E D++
Sbjct: 168 LSAKINYESTAERLSIKESEGSESDSDEESAISDEE 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,377,054
Number of Sequences: 27780
Number of extensions: 144841
Number of successful extensions: 466
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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