Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F10
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76740.1 68414.m08931 expressed protein weak similarity to fi...    28   2.5  
At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR...    27   4.4  
At5g25930.1 68418.m03081 leucine-rich repeat family protein / pr...    27   5.9  
At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N domain-...    27   5.9  
At3g55660.1 68416.m06184 expressed protein contains Pfam profile...    27   5.9  
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR...    27   5.9  
At3g47790.1 68416.m05206 ABC transporter family protein contains...    27   5.9  

>At1g76740.1 68414.m08931 expressed protein weak similarity to
           fimbriae-associated protein Fap1 (GI:3929312)
           [Streptococcus parasanguinis]; weak similarity to 1MDa_1
           protein (GI:24620455) [Caenorhabditis elegans]
          Length = 1532

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 250 LNVLPCQQTLKGIKKEIPRIKKESLQNRRLRRKMS 354
           +NVL  ++ +K +K +  ++KK   Q+RRL + +S
Sbjct: 312 VNVLLDKRPVKAVKPDYLKVKKAPKQSRRLEKSLS 346


>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
            class), putative (RPS4) domain signature TIR-NBS-LRR
            exists, suggestive of a disease resistance protein.
            Identical to RPS4 (GI:11357255). False intron created at
            intron 2 to escape a frameshift in the BAC sequence.
          Length = 1217

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +1

Query: 268  QQTLKGIKKEIPRIKKESLQNRRLRRKMSNGRPECHAELFMRAMDWNM 411
            Q+T +G+   + + KK  + N R ++K  +GR +    + +   + N+
Sbjct: 1159 QETTEGVDGRVNKKKKTRMDNGRPKKKQRSGRDDNQTRMQVELQEGNI 1206


>At5g25930.1 68418.m03081 leucine-rich repeat family protein /
           protein kinase family protein contains similarity to
           Swiss-Prot:P47735 receptor-like protein kinase 5
           precursor [Arabidopsis thaliana]; contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1005

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 159 ESDGDC---EDIWDDKKLNDAYDKALRIANVEV 248
           ES G C   + IWD KKL+   +K   IA VE+
Sbjct: 705 ESSGQCVAVKRIWDSKKLDQKLEKEF-IAEVEI 736


>At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N
           domain-containing protein / octicosapeptide/Phox/Bemp1
           (PB1) domain-containing protein contains Pfam profiles
           PF00627: Ubiquitin-associated (UBA)/TS-N domain,
           PF00569: Zinc finger ZZ type domain, PF00564: PB1 domain
          Length = 704

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +3

Query: 87  EKLSFKINIMSKSEVLYMKGMNTSESDGDCEDIWDDKKLNDAYDKALRIANVEVAKRVAM 266
           EK++   N+ + +E+     +  S+ DGD   + DD  L D  ++ L+   + V     +
Sbjct: 40  EKIAALFNLSADAEL----SLTYSDEDGDVVALVDDNDLFDVTNQRLKFLKINV--NAGV 93

Query: 267 STNT 278
           STN+
Sbjct: 94  STNS 97


>At3g55660.1 68416.m06184 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 579

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +3

Query: 51  KNLSKIYSAKNIEKLSFKINIMSKSEVLYMKGMNTSESDGDCEDIWDDKKL 203
           K++ + YS + +E L++ I +  + EVL+M  ++  + DGD +   D  +L
Sbjct: 441 KSILESYS-RVLESLAYSIGVRIE-EVLFMDDISKDDGDGDDDSCSDKLRL 489


>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1226

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 48  NKNLSKIY-SAKNIEKLSFKINIMSKSEVLYMKGMNTSESDGDCED 182
           ++NL  +Y    +I++L    NI+ +  +L MKG    +   DC D
Sbjct: 719 SQNLETLYLDGTSIKELPLNFNILQRLVILNMKGCAKLKEFPDCLD 764


>At3g47790.1 68416.m05206 ABC transporter family protein contains
           Pfam domain, PF00005: ABC transporter
          Length = 901

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 21  IALFCSRY*NKNLSKIYSAKNIEKLSFKINIMSKSEVLYMKGMNTSESDGDCEDIWD 191
           + LF     +K +SK YS     +LS  I+++   +V+YM   +T       + +WD
Sbjct: 710 VNLFHGGIGDKQVSK-YSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRKSLWD 765


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,661,546
Number of Sequences: 28952
Number of extensions: 125753
Number of successful extensions: 392
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)