Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F09
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 159 1e-39
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 155 1e-38
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 29 2.1
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955... 28 3.7
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 3.7
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392... 27 4.9
02_02_0343 + 9163976-9165220 27 6.4
04_04_1631 - 34919197-34919205,34919865-34920204,34920418-349207... 27 8.5
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 159 bits (385), Expect = 1e-39
Identities = 75/123 (60%), Positives = 86/123 (69%)
Frame = +3
Query: 60 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 239
GFVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 240 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTG 419
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG D Y G
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 119
Query: 420 ATE 428
E
Sbjct: 120 NVE 122
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 155 bits (377), Expect = 1e-38
Identities = 74/123 (60%), Positives = 85/123 (69%)
Frame = +3
Query: 60 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 239
GFVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 240 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTG 419
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG D Y G
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEG 119
Query: 420 ATE 428
E
Sbjct: 120 NIE 122
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 334 LTMLLPTAL-VCCWQEDCCRGSA 399
L++L PT L CW DCC GS+
Sbjct: 691 LSVLEPTFLNESCWSSDCCSGSS 713
>10_06_0008 -
9533424-9533475,9533526-9535344,9535599-9536364,
9551969-9552097
Length = 921
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 419 TC-VETVQAEPLQQSSCQQQTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVIT 267
TC VET +AEP + + S VGSS ++ W F V + N +T
Sbjct: 271 TCFVETPRAEPAPVVPQEGEASGVGSSEAPSLFAGSV-WGFQMVTTRRNAVT 321
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 183 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 305
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>05_01_0479 -
3920992-3921513,3921643-3921756,3921905-3922482,
3922709-3923067,3923132-3923205
Length = 548
Score = 27.5 bits (58), Expect = 4.9
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -2
Query: 389 LQQSSCQQQTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVITLN---A*VCNLTGNIFIG* 219
LQ + Q + S G+ ++S +I W V T + T+N + V + GN+ IG
Sbjct: 32 LQLNLTQLKLSRDGNLVISNNATGSILWSTDIVNRTSSATTMNNTASVVLSNDGNLVIG- 90
Query: 218 PYNQSVLW 195
+ +VLW
Sbjct: 91 -SSSNVLW 97
>02_02_0343 + 9163976-9165220
Length = 414
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 365 QTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVITLN 261
Q+ A+ S++ S THL + E + V D +ITLN
Sbjct: 209 QSMALLSNLTSLTHLTLLECEDLTVDGFDPLITLN 243
>04_04_1631 -
34919197-34919205,34919865-34920204,34920418-34920726,
34920781-34921307,34921700-34921852,34922102-34922186,
34922360-34922364
Length = 475
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 375 LPATDQCSRQQHS*SNPP-*YHSVGVHESRQHR 280
L +T CSR++ NPP H HE ++HR
Sbjct: 69 LSSTASCSRKEAKVDNPPHGQHDNVTHEQQRHR 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,695,664
Number of Sequences: 37544
Number of extensions: 224981
Number of successful extensions: 531
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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