Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F09
(429 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 157 3e-39
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 156 5e-39
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 28 2.3
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 28 2.3
At2g24180.1 68415.m02889 cytochrome P450 family protein 28 2.3
At5g35753.1 68418.m04282 expressed protein 27 7.1
At3g28890.1 68416.m03606 leucine-rich repeat family protein cont... 27 7.1
At1g77300.1 68414.m09002 SET domain-containing protein similar t... 26 9.4
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 157 bits (381), Expect = 3e-39
Identities = 72/124 (58%), Positives = 86/124 (69%)
Frame = +3
Query: 57 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 236
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 237 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 416
Q+ + I GD + +AY+HELP+YG+ VGLTNYAAAYCTG D Y
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
Query: 417 GATE 428
G E
Sbjct: 121 GNVE 124
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 156 bits (379), Expect = 5e-39
Identities = 72/124 (58%), Positives = 86/124 (69%)
Frame = +3
Query: 57 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 236
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 237 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 416
Q+ + I GD + +AY+HELP+YG+ VGLTNYAAAYCTG D Y
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
Query: 417 GATE 428
G E
Sbjct: 121 GNVE 124
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +3
Query: 75 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 248
VKN + + ++ KR+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +3
Query: 75 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 248
VKN + + ++ KR+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At2g24180.1 68415.m02889 cytochrome P450 family protein
Length = 503
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 371 QQQTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVITLN 261
Q Q + +GSS ++ TH+ I + G +VITL+
Sbjct: 281 QSQETKLGSSRITDTHIRAIIMDLFVAGVDTSVITLD 317
>At5g35753.1 68418.m04282 expressed protein
Length = 592
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 123 RREGKTDYYARKRL-VVQDKNKYNTPKYRLIVRLSNKDVTCQ 245
RR G+ DYY +KRL Y +Y + + NK ++C+
Sbjct: 79 RRSGEIDYYLQKRLDTFWTVCTYCKVQYEYLRKYVNKRLSCK 120
>At3g28890.1 68416.m03606 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-0B
[Lycopersicon esculentum] gi|3894387|gb|AAC78593
Length = 711
Score = 26.6 bits (56), Expect = 7.1
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Frame = -2
Query: 374 CQQQTSAVGSSIVSQTHLDTIAWEFMR--------VGSTDNVITLNA*VCNLTGNI 231
C Q + V SSI + +HL T+ F R +G ++ TLN V N G I
Sbjct: 178 CNQFSGQVPSSIGNLSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQI 233
>At1g77300.1 68414.m09002 SET domain-containing protein similar to
huntingtin interacting protein 1 [Homo sapiens]
GI:12697196; contains Pfam profile PF00856: SET domain
Length = 1759
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 81 NKQYFKRYQVKFKRRREGKTDYYAR 155
N+Q+ KR VKF+R + GK Y R
Sbjct: 1017 NQQFQKRKYVKFERFQSGKKGYGLR 1041
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,420,736
Number of Sequences: 28952
Number of extensions: 180003
Number of successful extensions: 476
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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