Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F08
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    29   0.27 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   1.1  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   2.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   3.4  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   3.4  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   3.4  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   4.4  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    24   5.9  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    24   7.8  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    24   7.8  

>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 28.7 bits (61), Expect = 0.27
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 114 YICISKVCFFVRGKLENYW---TDQREAATIRRGINRRW 221
           +I +    F +  K+EN W    ++RE A IRR IN R+
Sbjct: 231 FIGVPLCLFALPDKMENAWFLTREEREVAIIRRDINARY 269


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 87  YVKLDIFSIYICISKVCFFVRGKLENYWTDQ 179
           +VKLD FSI+I    VC F        W D+
Sbjct: 517 FVKLDYFSIFITFLHVCSFGSNSF-TVWEDR 546


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 144 VRGKLENYWTDQREAATIRRGINRRW 221
           +RGKL  Y   ++   TI R INR W
Sbjct: 856 LRGKLNLYNQKEKSIKTIGRYINRFW 881


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 109 EKMSSLTYLFETIVETDILLF 47
           +K+  ++YL  T VE+ ILLF
Sbjct: 77  QKLQDISYLLRTCVESYILLF 97


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 136 VSLSEVNWKTTGPISVKPQP--FDAELIVDGYRLYI 237
           +SLS+ +W+ T  IS +  P  F A + + G  +YI
Sbjct: 126 LSLSKGSWEVTNTISCEKTPLLFCATVQISGNEIYI 161


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 127 LIHIYIEKMSSLTYLFETIVETDILLFL 44
           +++IY  ++ S  Y F +++ T +LL L
Sbjct: 513 MVYIYAVRLHSFYYTFRSVLVTSLLLSL 540


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 91  SSLTSSLYIYV*AKFVSLSEVNWKTT 168
           SSLT S+     AK  + +EVNW T+
Sbjct: 587 SSLTGSVVTPFSAKTSTFNEVNWSTS 612


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 198 EWLRLHADRSSSFPVYLGQRNKLCLYIY 115
           EW R+    S    +YLG R +   Y+Y
Sbjct: 879 EWQRMQGIESGDILLYLGSRTQREEYLY 906


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 249 MSHVFSICLFINLFAPI 299
           ++HVF I  FI++F P+
Sbjct: 134 VTHVFPITTFIDMFGPL 150


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 142 KKQTLLIHIYIEKMSSLTYLFETIVETDILLFLLAYKFS 26
           K+ T L+  ++ ++S   YL+ + V  DI+ +++A   S
Sbjct: 178 KRLTGLLSNFVSQLSIRNYLYNSTVFEDIMSWVVAMSSS 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,374
Number of Sequences: 5004
Number of extensions: 28036
Number of successful extensions: 71
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)