Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F08
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1077 - 11027732-11027839,11028346-11028477,11029722-110298...    30   0.57 
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657     28   2.3  
04_04_1300 - 32457901-32457985,32458375-32459468                       27   5.3  
04_04_0197 + 23499527-23500603                                         27   5.3  
09_04_0586 - 18736643-18736914,18737085-18737187,18737279-187379...    26   9.3  
03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325     26   9.3  

>08_01_1077 -
           11027732-11027839,11028346-11028477,11029722-11029802,
           11029911-11030063,11030167-11030281,11030282-11030927,
           11031409-11031613,11031696-11031758
          Length = 500

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 316 MHVFYFMGANKLINKQIE-KTWLIEFEKYIAYNHLRLIPRRMVAASR 179
           +H F    A+  IN+ IE K  ++EF +YI +    L P+ M  AS+
Sbjct: 185 LHSFAIDHASSWINRAIELKAQVLEFTEYIRWESFYLDPQLMAFASQ 231


>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
          Length = 1032

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 267 LRKHGS*NLKNI*PITIYD*FRVEWLRLHADRSSSFPVYLGQR 139
           LR+H     + + P  +YD   V WL  H D   SF ++L QR
Sbjct: 673 LREH---RRRGVSPRRVYDGRSVTWLAYHGDYDLSFLLHLLQR 712


>04_04_1300 - 32457901-32457985,32458375-32459468
          Length = 392

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 301 FMGANKLINKQIEKTWLIEF 242
           F+G+ KL+ K + KTWL+ +
Sbjct: 166 FLGSAKLLMKWLAKTWLLRY 185


>04_04_0197 + 23499527-23500603
          Length = 358

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 195 IRRGINRRWL*AIYFSNSMSHVFSICLFI 281
           +R+GI  RWL  I+   S   +   CLF+
Sbjct: 86  VRKGIGDRWLVRIWQGRSAPGISICCLFV 114


>09_04_0586 -
           18736643-18736914,18737085-18737187,18737279-18737900,
           18738376-18738463,18738537-18738614,18738741-18738816,
           18738912-18738970,18739061-18739127,18739268-18739405
          Length = 500

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 87  YVKLDIFSIYICISKVCFFVRGKLENYWTDQREAAT 194
           ++  DI   Y+  ++VCF   G    YWT   E  T
Sbjct: 163 FLSEDIVKEYVDFAEVCFREFGDRVKYWTTFNEPFT 198


>03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325
          Length = 321

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 262 KTWLIEFEKYIAYNHLRLIP 203
           +TW++E+++ + +   RLIP
Sbjct: 264 ETWVVEYQRSVVFEGTRLIP 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,436,418
Number of Sequences: 37544
Number of extensions: 147137
Number of successful extensions: 266
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)