Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F08
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55279| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.59 
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                26   7.3  
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)               26   7.3  
SB_27571| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_24864| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_22176| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_47292| Best HMM Match : DUF1187 (HMM E-Value=2.9)                   26   9.7  
SB_31895| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  

>SB_55279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 201 VEWLRLHADRSSSFPVYLGQRNKLCLYIYI 112
           + W R H   S  FPVYL +   L LYIY+
Sbjct: 308 IVWRR-HISSSCRFPVYLSKAYILALYIYV 336


>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 169 GPISVKPQPFDAELIVDGYRLY 234
           G +SV P   DAE+ VDG R+Y
Sbjct: 367 GRVSVTPSNGDAEVFVDGKRVY 388


>SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 1213

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 120 CISKVCFFVRGKLENYW 170
           C+  VCF++R    N+W
Sbjct: 638 CVGLVCFYIRNVAANWW 654


>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 839

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 223 NHLRLIPRRMVAASR*SV-Q*FSSLPRTKKQTLLIHIYIEKMSSLTYLFE 77
           +H RL    MV   R  V + +    RT  ++ L ++Y+E+  +LTY F+
Sbjct: 398 SHTRLQRNMMVQTERDIVGRDYREQLRTLTKSTLSYLYLERKFNLTYSFD 447


>SB_27571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -3

Query: 106 KMSSLTYLFETIVETDILLFLLAYK--FSQDHVE 11
           + S ++YL+  +V   +L+FL+A +  F++ H E
Sbjct: 13  RCSKMSYLYAALVNVFVLIFLVAVEPPFAKQHSE 46


>SB_24864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 173 GPVVFQFTSDKETNFAYTYIYREDVK 96
           GPV+      +E +FAY Y  +E+++
Sbjct: 99  GPVIVSIPMPREKSFAYLYASKEEME 124


>SB_22176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 173 GPVVFQFTSDKETNFAYTYIYREDVK 96
           GPV+      +E +FAY Y  +E+++
Sbjct: 99  GPVIVSIPMPREKSFAYLYASKEEME 124


>SB_47292| Best HMM Match : DUF1187 (HMM E-Value=2.9)
          Length = 238

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 218 MVIGYIFFKFYEPCFLNLFVY*FICSHK 301
           +V+   FF +YEP + N+ +Y  + S K
Sbjct: 83  VVLLVFFFVYYEPAYYNICIYAKLASMK 110


>SB_31895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 154 LPRTKKQTLLIHIYIEKMSSLTYLF 80
           LP+TKK TL   IYI    S T +F
Sbjct: 139 LPKTKKVTLSYVIYIYSFLSCTIVF 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,127,869
Number of Sequences: 59808
Number of extensions: 184094
Number of successful extensions: 298
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)