Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F08
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    27   4.9  
Z46937-5|CAA87057.1|  376|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z46937-2|CAB60996.1|  444|Caenorhabditis elegans Hypothetical pr...    26   6.4  
U27124-1|AAA73482.1|  376|Caenorhabditis elegans MPK-1 protein.        26   6.4  
U03879-1|AAA18956.1|  444|Caenorhabditis elegans Sur-1 MAP kinas...    26   6.4  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical
           protein Y6G8.5 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -3

Query: 310 VFYFMGANKLINKQIEKTWLIEFEKYIAYNHLRLIPRRMVAASR*SVQ*FSSLPRTKKQT 131
           +F+F    +L N  I +T  +    ++   HL LIP+ +V+  R +   F++ P +K   
Sbjct: 229 LFFFKTMPRL-NVSILQTLSVSVMFFLMNRHLTLIPQFLVSIKRFNFPKFNNFPSSKMHL 287

Query: 130 LL 125
            L
Sbjct: 288 FL 289


>U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical
           protein K11G9.5 protein.
          Length = 460

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 69  TIVSNKYVKLDIFSIYICISKVC 137
           +I+SNKY  L +F  ++C+  VC
Sbjct: 2   SIISNKYRVLVVFIGFLCLVSVC 24


>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
            pathway homologprotein 1 protein.
          Length = 1451

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 168  WTDQREAATIRRGINRRWL*AIYFSNSMSHVFS 266
            +T ++EAATI + +NR     ++  NS+ H FS
Sbjct: 1181 YTIEKEAATIPKFLNRILGLPVHAQNSLFHYFS 1213


>Z46937-5|CAA87057.1|  376|Caenorhabditis elegans Hypothetical
           protein F43C1.2a protein.
          Length = 376

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 88  YLFETIVETDILLFLLAYKFSQDHV 14
           Y+ + ++ETD+   L   K S DHV
Sbjct: 105 YIVQCLMETDLYKLLKTQKLSNDHV 129


>Z46937-2|CAB60996.1|  444|Caenorhabditis elegans Hypothetical
           protein F43C1.2b protein.
          Length = 444

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 88  YLFETIVETDILLFLLAYKFSQDHV 14
           Y+ + ++ETD+   L   K S DHV
Sbjct: 173 YIVQCLMETDLYKLLKTQKLSNDHV 197


>U27124-1|AAA73482.1|  376|Caenorhabditis elegans MPK-1 protein.
          Length = 376

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 88  YLFETIVETDILLFLLAYKFSQDHV 14
           Y+ + ++ETD+   L   K S DHV
Sbjct: 105 YIVQCLMETDLYKLLKTQKLSNDHV 129


>U03879-1|AAA18956.1|  444|Caenorhabditis elegans Sur-1 MAP kinase
           protein.
          Length = 444

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 88  YLFETIVETDILLFLLAYKFSQDHV 14
           Y+ + ++ETD+   L   K S DHV
Sbjct: 173 YIVQCLMETDLYKLLKTQKLSNDHV 197


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 221 VIGYIFFKFYEPCFLNLFVY*FI 289
           ++G   F FY PC + +F Y +I
Sbjct: 150 MLGSSIFAFYLPCLIMIFTYGYI 172


>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical
           protein ZK430.1 protein.
          Length = 1650

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 295 GANKLINKQIEKTWLIEFEKYIAY 224
           GAN+ +NKQIEK  L+E   Y+ +
Sbjct: 86  GANEELNKQIEKL-LLELSPYLQH 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,893,960
Number of Sequences: 27780
Number of extensions: 151118
Number of successful extensions: 318
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)