Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F08
         (348 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32670.1 68417.m04651 expressed protein ; expression supporte...    29   0.85 
At5g52290.1 68418.m06489 hypothetical protein                          27   3.4  
At3g50220.1 68416.m05492 expressed protein contains Pfam profile...    27   3.4  
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f...    27   4.5  
At1g13780.1 68414.m01617 F-box family protein contains F-box dom...    27   4.5  
At2g16290.1 68415.m01865 F-box family protein contains Pfam PF00...    26   6.0  
At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1) ide...    26   7.9  
At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1) ide...    26   7.9  

>At4g32670.1 68417.m04651 expressed protein ; expression supported
           by MPSS
          Length = 808

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 231 IYFSNSMSHVFSICLFINLFAPIK*KTCIY 320
           +YF N  SHVF +C+ + +  PI    C +
Sbjct: 559 LYFLNLASHVFLLCIMLLILKPIILDLCAF 588


>At5g52290.1 68418.m06489 hypothetical protein
          Length = 1569

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 216 RWL*AIYFSNSMSHVFSICLFINLFAP 296
           R+L   YFS   SHVF    F+NL AP
Sbjct: 4   RFLNIDYFSTPPSHVFETLGFLNLPAP 30


>At3g50220.1 68416.m05492 expressed protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 322

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 145 TKKQTLLIHIYIEKMSSLTYLF-ETIVETDILLFLLAYKFSQDHV 14
           T  + +L+H YI+K +S T L+    V    ++FLL   +++D +
Sbjct: 8   TNTKLILLHPYIQKQTSTTRLWLLAFVSFFTIVFLLTLLYTRDTI 52


>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
           factor (HB-14) identical to homeodomain transcription
           factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
           thaliana];
          Length = 852

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 197 NGCGFTLIGPVVFQFTSDKETNFAYTYIYREDVK 96
           NGC F  +  + FQFT D  +  +   + R+ V+
Sbjct: 639 NGCNFRSVLTIAFQFTFDNHSRDSVASMARQYVR 672


>At1g13780.1 68414.m01617 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 451

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 43  IRIKGCQFQL*FQISMSSLTSSLYIYV*A-KFVSLSEVNWKTTGPISVK 186
           + +  C+  +  ++S S L    ++Y+   KF+ L EV W ++G ++++
Sbjct: 135 LNLYSCKTLVSLKLSYSGLEDPGFVYLPCLKFMHLREVRWDSSGTMNLE 183


>At2g16290.1 68415.m01865 F-box family protein contains Pfam
           PF00646: F-box domain;
          Length = 415

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 204 RVEWLRLHADRSSSFPV-YLGQRNKLCLY 121
           RVE+LRLH++ S  F V + G+   L +Y
Sbjct: 181 RVEFLRLHSEDSRDFAVLFAGRMCNLVMY 209


>At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1)
           identical to holocarboxylase synthetase 1 (hcs1)
           [Arabidopsis thaliana] GI:19698365
          Length = 367

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 60  SVSTIVSNKYVKLDIFSIYICISKVCFFVRGKLENYW 170
           S   +VS+ + +L + S+  C++ + F  RG+ +N W
Sbjct: 122 STHDVVSHNFSELPVGSV--CVTDIQFKGRGRTKNVW 156


>At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1)
           identical to holocarboxylase synthetase 1 (hcs1)
           [Arabidopsis thaliana] GI:19698365
          Length = 367

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 60  SVSTIVSNKYVKLDIFSIYICISKVCFFVRGKLENYW 170
           S   +VS+ + +L + S+  C++ + F  RG+ +N W
Sbjct: 122 STHDVVSHNFSELPVGSV--CVTDIQFKGRGRTKNVW 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,276,247
Number of Sequences: 28952
Number of extensions: 132803
Number of successful extensions: 259
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)